Browse Element(s) Details


Os.44434.1.S1_at

Description gb:NM_186433.1
DB_XREF= gi:34899951
GEN=P0428D12.17
TID=Os.44434.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.44434 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative selenium-binding protein (P0428D12.17), mRNA.
PROD=putative selenium-binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g069609/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06950Os.6600.1.S1_at11/117+3410019..3422806Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os07g06960Os.44434.1.S1_at9/117+3424580..3426767pentatricopeptide, putative
LOC_Os07g06970Os.49794.1.S1_at11/117+3427782..3433034HEN1, putative, expressed
LOC_Os07g06980Os.21399.1.S1_a_at11/117+3434310..3443018histone deacetylase HDA110 isoform 1, putative, expressed
LOC_Os07g06990Os.28059.5.A1_x_at11/117+3443285..3444565hypothetical protein
LOC_Os07g07000Os.28059.1.S1_a_at11/117+3444643..3448633Syntaxin 132, putative, expressed
LOC_Os07g07000OsAffx.31589.1.S1_s_at1/117+3444643..3448633Syntaxin 132, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44434.1.S1_at--142--7691Chr07:3425069..3425093 (25 bp)
GGGTATGTACCGGATGTGTCATCTG
LOC_Os07g06960
Os.44434.1.S1_at--680--3971Chr07:3425008..3425032 (25 bp)
CGGTCAAGGTGCACAGCGAGCGATT
LOC_Os07g06960
Os.44434.1.S1_at--330--10871Chr07:3424985..3425009 (25 bp)
TTGGCAATTGCTTATGGCTTCATAG
LOC_Os07g06960
Os.44434.1.S1_at--368--291Chr07:3424964..3424988 (25 bp)
ATAGTTCTTGAAGCTGGCAGCCCAA
LOC_Os07g06960
Os.44434.1.S1_at--755--5071Chr07:3424948..3424972 (25 bp)
GCAGCCCAATCCGTATCGTCAAGAA
LOC_Os07g06960
Os.44434.1.S1_at--1087--9391Chr07:3424933..3424957 (25 bp)
TCGTCAAGAACCTTCGTGTCTGTGG
LOC_Os07g06960
Os.44434.1.S1_at--125--7051Chr07:3424669..3424693 (25 bp)
GTAAAGCAGGTCCAGCGACGGATCC
LOC_Os07g06960
Os.44434.1.S1_at--728--9571Chr07:3424625..3424649 (25 bp)
TCTTCGTGTAGATCATGCTGGTGGT
LOC_Os07g06960
Os.44434.1.S1_at--960--4971Chr07:3424589..3424613 (25 bp)
GCATGCTAAGCATGGCCGAGCAGAT
LOC_Os07g06960
Os.44434.1.S1_at--226--10231Chr07:3424506..3424530 (25 bp)
TTTGGCGGGTTGAGATGACTACTTT
NONE
Os.44434.1.S1_at--1063--3211Chr07:3424464..3424488 (25 bp)
CAAGTGTTACATCCCCAATCATATT
NONE
Target Sequence 
GGGTATGTACCGGATGTGTCATCTGTATTGCATGACATTGGGGAGGAAGAGAAGGTGCACGCGGTCAAGGTGCACAGCGA
GCGATTGGCAATTGCTTATGGCTTCATAGTTCTTGAAGCTGGCAGCCCAATCCGTATCGTCAAGAACCTTCGTGTCTGTG
GGGATTGCCATGAGTTCAGTAAGATGGTGACAATGGTNTNNNNNNNNNNNNTNATNNTNNGNGNTGGTANTTGCCGGCAA
CGCNGNTGAGCTCACCGGGGTAAAGCAGGTCCAGCGACGGATCCGGGAGGCCGGCTGTGAGGTTCTTCGTGTAGATCATG
CTGGTGGTATGGAGGAGGGGCATGCTAAGCATGGCCGAGCAGATTGGGGCTAAATTACAGAGGCCGGTNAGTTTGGNTGC
TTTGTTCAATCGGTGATGGGGTTTTGGCGGGTTGAGATGACTACTTTGTNATGGCCAGACAGAGCAAGTGTTACATCCCC
AATCATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44434.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis