Browse Element(s) Details


OsAffx.28317.1.S1_at

Description tigr:9635.m00643
TID=OsAffx.28317.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ALG6, ALG8 glycosyltransferase family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0701011/11ALG6, ALG8 glycosyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06970Os.49794.1.S1_at11/117+3427782..3433034HEN1, putative, expressed
LOC_Os07g06980Os.21399.1.S1_a_at11/117+3434310..3443018histone deacetylase HDA110 isoform 1, putative, expressed
LOC_Os07g06990Os.28059.5.A1_x_at11/117+3443285..3444565hypothetical protein
LOC_Os07g07000Os.28059.1.S1_a_at11/117+3444643..3448633Syntaxin 132, putative, expressed
LOC_Os07g07000OsAffx.31589.1.S1_s_at1/117+3444643..3448633Syntaxin 132, putative, expressed
LOC_Os07g07010OsAffx.28317.1.S1_at11/117+3452188..3455354ALG6, ALG8 glycosyltransferase family protein, expressed
LOC_Os07g07020Os.18373.1.S1_at11/117+3458131..3461054SOH1 family protein, expressed
LOC_Os07g07030Os.7388.1.S1_s_at11/117+3463488..3465508expressed protein
LOC_Os07g07030Os.7388.2.S1_at11/117+3463488..3465508expressed protein
LOC_Os07g07030Os.7388.2.S1_x_at11/117+3463488..3465508expressed protein
LOC_Os07g07040OsAffx.22469.1.S1_x_at11/117+3467731..3469935expressed protein
LOC_Os07g07040Os.12429.1.S1_at11/117+3467731..3469935expressed protein
LOC_Os07g07050Os.44431.1.S1_at11/117+3470134..3475221Aldehyde oxidase 4, putative, expressed
LOC_Os07g07050Os.44431.2.S1_x_at11/117+3470134..3475221Aldehyde oxidase 4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28317.1.S1_at--886--9891Chr07:3454338..3454362 (25 bp)
TACTGGGAACCTTTGCTTTTGTTTG
LOC_Os07g07010
OsAffx.28317.1.S1_at--882--7711Chr07:3454362..3454386 (25 bp)
GGTGGCCATTTTTGCATTCTTATGA
LOC_Os07g07010
OsAffx.28317.1.S1_at--422--4771Chr07:3454388..3454587 (25 bp)
GCTGCTATGCAGGTGATCTCTCGAT
LOC_Os07g07010
OsAffx.28317.1.S1_at--441--8851Chr07:3454576..3454600 (25 bp)
TGATCTCTCGATTAGCTCCATTTGA
LOC_Os07g07010
OsAffx.28317.1.S1_at--218--2991Chr07:3455015..3455039 (25 bp)
AATGTACCCACTTATCTGCCGTGAT
LOC_Os07g07010
OsAffx.28317.1.S1_at--1047--3991Chr07:3455034..3455058 (25 bp)
CGTGATCACCTTCTTCTACAATATA
LOC_Os07g07010
OsAffx.28317.1.S1_at--659--10551Chr07:3455065..3455089 (25 bp)
TTCTTGGTCTCTTCGTTCTTATTTA
LOC_Os07g07010
OsAffx.28317.1.S1_at--575--3651Chr07:3455082..3455106 (25 bp)
CTTATTTACTACTCTCCTGGTGGAA
LOC_Os07g07010
OsAffx.28317.1.S1_at--636--7991Chr07:3455119..3455143 (25 bp)
GGATGAGCATTCCATCTGGAGCCAA
LOC_Os07g07010
OsAffx.28317.1.S1_at--615--2851Chr07:3455153..3455177 (25 bp)
AAGTCTGGCATTGTTATGCTCGCTC
LOC_Os07g07010
OsAffx.28317.1.S1_at--695--10431Chr07:3455166..3455190 (25 bp)
TTATGCTCGCTCTTACTTCAAGTTC
LOC_Os07g07010
Target Sequence 
TACTGGGAACCTTTGCTTTTGTTTGGTGGCCATTTTTGCATTCTTATGAGGCTGCTATGCAGGTGATCTCTCGATTAGCT
CCATTTGAGCGANNNCACGAGAAATCAATTTTGCTTCCTCTTTTGCCTGCAAGCCTCTTAGCACTACAAGAACCTCACTT
GTATGGATGGCTCATGTACTTTGGCCTTTTCTCAATGTACCCACTTATCTGCCGTGATCACCTTCTTCTACAATATATAG
CTGTTCTTGGTCTCTTCGTTCTTATTTACTACTCTCCTGGTGGAAGCTCCAAAAAGGGGATGAGCATTCCATCTGGAGCC
AAGGCAGTTCTAAGTCTGGCATTGTTATGCTCGCTCTTACTTCAAGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28317.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis