Browse Element(s) Details


Os.39913.1.A1_at

Description gb:CF320837
DB_XREF= gi:33692598
DB_XREF=HD--11-N22.g1
CLONE=HD--11-N22
TID=Os.39913.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.39913 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0039H02.11 (P0039H02.11), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0707011/11C2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07020Os.18373.1.S1_at11/117+3458131..3461054SOH1 family protein, expressed
LOC_Os07g07030Os.7388.1.S1_s_at11/117+3463488..3465508expressed protein
LOC_Os07g07030Os.7388.2.S1_at11/117+3463488..3465508expressed protein
LOC_Os07g07030Os.7388.2.S1_x_at11/117+3463488..3465508expressed protein
LOC_Os07g07040OsAffx.22469.1.S1_x_at11/117+3467731..3469935expressed protein
LOC_Os07g07040Os.12429.1.S1_at11/117+3467731..3469935expressed protein
LOC_Os07g07050Os.44431.1.S1_at11/117+3470134..3475221Aldehyde oxidase 4, putative, expressed
LOC_Os07g07050Os.44431.2.S1_x_at11/117+3470134..3475221Aldehyde oxidase 4, putative, expressed
LOC_Os07g07060Os.31875.2.S1_at10/117+3481393..3484193Anticodon binding domain containing protein, expressed
LOC_Os07g07060Os.31875.1.S1_at8/117+3481393..3484193Anticodon binding domain containing protein, expressed
LOC_Os07g07070Os.39913.1.A1_at11/117+3484259..3487687C2 domain containing protein, expressed
LOC_Os07g07080Os.44430.1.S1_at11/117+3490401..3497610ankyrin repeat family protein, putative, expressed
LOC_Os07g07080Os.44430.1.S2_at6/117+3490401..3497610ankyrin repeat family protein, putative, expressed
LOC_Os07g07094OsAffx.24242.3.S1_s_at11/117+3503817..3510301expressed protein
LOC_Os07g07094OsAffx.24242.3.S1_at9/117+3503817..3510301expressed protein
LOC_Os07g07094OsAffx.24242.1.S1_at9/117+3503817..3510301expressed protein
LOC_Os07g07110Os.46314.2.S1_x_at1/117+3510596..3517980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07110Os.27691.1.S1_x_at1/117+3510596..3517980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07110OsAffx.32036.1.S1_at1/117+3510596..3517980retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39913.1.A1_at--656--6051Chr07:3484780..3484804 (25 bp)
GAGTTCGACGCGATCCCGAGCTCGA
LOC_Os07g07070
Os.39913.1.A1_at--466--4691Chr07:3484703..3484727 (25 bp)
GCGGCTGCAGGCGATGGTCGGCGAC
LOC_Os07g07070
Os.39913.1.A1_at--315--4431Chr07:3484588..3484612 (25 bp)
GCCATGGCGCTGTACGTGGTGCCCA
LOC_Os07g07070
Os.39913.1.A1_at--1079--3931Chr07:3484471..3484495 (25 bp)
CGGCTGCCGTCCATGTCGGAAAGAA
LOC_Os07g07070
Os.39913.1.A1_at--965--9171Chr07:3484467..3484491 (25 bp)
TGCCGTCCATGTCGGAAAGAATCAT
LOC_Os07g07070
Os.39913.1.A1_at--136--9011Chr07:3484432..3484456 (25 bp)
TGAATATATGATCCGGCAAGCAGTG
LOC_Os07g07070
Os.39913.1.A1_at--1151--5011Chr07:3484413..3484437 (25 bp)
GCAGTGCTAATTGATTACTTTGCAT
LOC_Os07g07070
Os.39913.1.A1_at--748--3531Chr07:3484370..3484394 (25 bp)
CATCCTCATAGTGTTGTCGAATTGT
LOC_Os07g07070
Os.39913.1.A1_at--774--7411Chr07:3484360..3484384 (25 bp)
GTGTTGTCGAATTGTCTATTTTCTA
LOC_Os07g07070
Os.39913.1.A1_at--887--3131Chr07:3484312..3484336 (25 bp)
AATTAGTTTATGTTTATCCCATGTA
LOC_Os07g07070
Os.39913.1.A1_at--870--531Chr07:3484297..3484321 (25 bp)
ATCCCATGTAATATTTCATTCGTAT
LOC_Os07g07070
Target Sequence 
GAGTTCGACGCGATCCCGAGCTCGAGGCCGCCGGAGGTGGTGCGGGCGAGGTACGACCGGGCGAGGATGGTCGGCGCGCG
GCTGCAGGCGATGGTCGGCGACGTGGCGACGCAGGCGGAGAGGCTGCAGGCGCTCGTGTCGTGGCGCGACCCGCGCGCCA
CGGGGGTGTTCGTCGCGCTCTGCGTGTTCGTGGCCATGGCGCTGTACGTGGTGCCCATCAAGGTGGTCGCCGTGGTCGCC
GGGTTCTACTACCTCCGCCACCCGATGTTCCGGGACCGGATGCCGGCGCCGGCGATCAACTTCTTCCGGCGGCTGCCGTC
CATGTCGGAAAGAATCATGTAAGATATATGAATATATGATCCGGCAAGCAGTGCTAATTGATTACTTTGCATAATAAACA
NNACCATTNCCATCCTCATAGTGTTGTCGAATTGTCTATTTTCTATGTTAGTAGAACAGAATAAACGAAATTAGTTTATG
TTTATCCCATGTAATATTTCATTCGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39913.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis