Browse Element(s) Details


OsAffx.24242.3.S1_s_at

Description tigr:9635.m00651
TID=OsAffx.24242.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0709411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07060Os.31875.2.S1_at10/117+3481393..3484193Anticodon binding domain containing protein, expressed
LOC_Os07g07060Os.31875.1.S1_at8/117+3481393..3484193Anticodon binding domain containing protein, expressed
LOC_Os07g07070Os.39913.1.A1_at11/117+3484259..3487687C2 domain containing protein, expressed
LOC_Os07g07080Os.44430.1.S1_at11/117+3490401..3497610ankyrin repeat family protein, putative, expressed
LOC_Os07g07080Os.44430.1.S2_at6/117+3490401..3497610ankyrin repeat family protein, putative, expressed
LOC_Os07g07094OsAffx.24242.3.S1_s_at11/117+3503817..3510301expressed protein
LOC_Os07g07094OsAffx.24242.3.S1_at9/117+3503817..3510301expressed protein
LOC_Os07g07094OsAffx.24242.1.S1_at9/117+3503817..3510301expressed protein
LOC_Os07g07110Os.46314.2.S1_x_at1/117+3510596..3517980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07110Os.27691.1.S1_x_at1/117+3510596..3517980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07110OsAffx.32036.1.S1_at1/117+3510596..3517980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07120Os.27691.2.S1_x_at2/117+3518557..3519737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07120Os.27691.1.S1_x_at2/117+3518557..3519737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07130Os.31929.11.S1_x_at11/117+3522202..3524008hypothetical protein
LOC_Os07g07140Os.46018.1.S1_x_at9/117+3526099..3527973hypothetical protein
LOC_Os07g07140Os.46018.1.S1_at9/117+3526099..3527973hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24242.3.S1_s_at--772--1911Chr07:3505672..3505696 (25 bp)
ACGGGCGATTGACGAGGATGAGCTC
LOC_Os07g07094
OsAffx.24242.3.S1_s_at--420--6311Chr07:3505688..3505712 (25 bp)
GATGAGCTCCTGGATGCCCTTGACG
LOC_Os07g07094
OsAffx.24242.3.S1_s_at--789--8551Chr07:3505698..3505722 (25 bp)
TGGATGCCCTTGACGGCGAGGACCT
LOC_Os07g07094
OsAffx.24242.3.S1_s_at--236--4631Chr07:3505713..3505737 (25 bp)
GCGAGGACCTGGAACGAGCTCACGA
LOC_Os07g07094
OsAffx.24242.3.S1_s_at--746--5451Chr07:3505724..3505748 (25 bp)
GAACGAGCTCACGAGCAGGCCCTGG
LOC_Os07g07094
OsAffx.24242.3.S1_s_at--897--1512Chr07:3505737..3505761 (25 bp)
AGCAGGCCCTGGTACTGGTCCATGA
LOC_Os07g07094
OsAffx.24242.3.S1_s_at--368--8551Chr07:3505806..3505827 (22 bp)
TGGAGGTATCGGAGTCGGACATGCC
LOC_Os07g07094
OsAffx.24242.3.S1_s_at--711--1051Chr07:3505863..3505887 (25 bp)
AGGTGGAGCGCCAAACCTTGCGCCA
LOC_Os07g07094
OsAffx.24242.3.S1_s_at--146--1671Chr07:3505869..3505893 (25 bp)
AGCGCCAAACCTTGCGCCAGCGGGT
LOC_Os07g07094
OsAffx.24242.3.S1_s_at--929--951Chr07:3506060..3506084 (25 bp)
AGGACGGTGCCGATGGACTTGTCCA
LOC_Os07g07094
OsAffx.24242.3.S1_s_at--867--831Chr07:3506072..3506096 (25 bp)
ATGGACTTGTCCATATCCTCCGGGA
LOC_Os07g07094
Target Sequence 
ACGGGCGATTGACGAGGATGAGCTCCTGGATGCCCTTGACGGCGAGGACCTGGAACGAGCTCACGAGCAGGCCCTGGTAC
TGGTCCATGAAGCTGGAGGTATCGGAGTCGGACATGCCGACGGGAAGGTGTTCGGCGTCGACAAGGACGAGCGAGGTGGA
GCGCCAAACCTTGCGCCAGCGGGTGGAGAGCGCGGCAGTGCGTGCGGCGTCCTTGACGGGGAGGCAGGAGACGATCCGGC
GGAGAGCACGTCGGGGAGGAGGCTGAGGCGGTCGACGCCGTCGTCGGGCAAGAGCGCGGAGAGGCGGGCCGGAGACCGGC
ACATCGGGGATGGCGAAGTGGATGTAGGAGAGGACGGTGCCGATGGACTTGTCCATATCCTCCGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24242.3.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis