Browse Element(s) Details


OsAffx.14216.1.S1_x_at

Description tigr:9632.m03831
TID=OsAffx.14216.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4033011/11F-box domain containing protein, expressed
LOC_Os04g403706/11F-box domain containing protein, expressed
LOC_Os09g329101/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40279OsAffx.10250.3.S1_at4/114+23732589..23732974NA
LOC_Os04g40290Os.54640.1.S1_at6/114+23736457..23740570ATPase, AAA family protein
LOC_Os04g40290Os.56299.1.S1_at1/114+23736457..23740570ATPase, AAA family protein
LOC_Os04g40290Os.49200.2.S1_at1/114+23736457..23740570ATPase, AAA family protein
LOC_Os04g40300Os.49160.1.S1_at11/114+23740972..23744231transglutaminase, putative, expressed
LOC_Os04g40310Os.16333.1.S1_at11/114+23744901..23748682isocitrate dehydrogenase, NAD-dependent family protein, expressed
LOC_Os04g40320Os.27286.1.S1_at10/114+23749115..23753127expressed protein
LOC_Os04g40330OsAffx.14216.1.S1_x_at11/114+23756979..23760327F-box domain containing protein, expressed
LOC_Os04g40330Os.9429.1.S1_at11/114+23756979..23760327F-box domain containing protein, expressed
LOC_Os04g40340Os.52304.1.S1_at8/114+23764935..23767303hypothetical protein
LOC_Os04g40350NANA4+23771794..23772611GRF zinc finger family protein
LOC_Os04g40360Os.14919.1.S1_at4/114+23773032..23778935transposon protein, putative, Mutator sub-class
LOC_Os04g40370Os.14215.1.S1_at11/114+23779729..23783138F-box domain containing protein, expressed
LOC_Os04g40370OsAffx.14216.1.S1_x_at6/114+23779729..23783138F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14216.1.S1_x_at--502--10751Chr04:23757795..23757819 (25 bp)
TTGATGCACCAATGCTACCTACCAA
LOC_Os04g40330
OsAffx.14216.1.S1_x_at--398--6471Chr04:23757737..23757761 (25 bp)
GATAACAGGATCGACCATTTCCCGG
LOC_Os04g40330
OsAffx.14216.1.S1_x_at--635--191Chr04:23757721..23757745 (25 bp)
ATTTCCCGGCCATATGACTATTTCT
LOC_Os04g40330
OsAffx.14216.1.S1_x_at--818--5694Chr09:19616899..19616965 (24 bp)
GACTATTTCTCTCTGGTTTCTTTTA
LOC_Os09g32910
OsAffx.14216.1.S1_x_at--134--10431Chr04:23757684..23757708 (25 bp)
TTATCAATGCATCTCCTTCCTTGGA
LOC_Os04g40330
OsAffx.14216.1.S1_x_at--428--10152Chr04:23782689..23782713 (25 bp)
TATCCTCAATAATGCGGTGTCACTT
LOC_Os04g40370
OsAffx.14216.1.S1_x_at--116--6112Chr04:23782714..23782738 (25 bp)
GAGTGTCTTACATTGGATACCATTT
LOC_Os04g40370
OsAffx.14216.1.S1_x_at--610--10092Chr04:23782767..23782791 (25 bp)
TAGGCGGTGTTTTCCCATGATAGAT
LOC_Os04g40370
OsAffx.14216.1.S1_x_at--101--6251Chr04:23757306..23757330 (25 bp)
GATGGTGTTCTCACGGAAGCTCCAA
LOC_Os04g40330
OsAffx.14216.1.S1_x_at--1098--10752Chr04:23782870..23782894 (25 bp)
TTGACTGTTCTGGAACCTTGCAGCC
LOC_Os04g40370
OsAffx.14216.1.S1_x_at--993--3612Chr04:23782886..23782910 (25 bp)
CTTGCAGCCGGTGCCATGTTAGAAG
LOC_Os04g40370
Target Sequence 
TTGATGCACCAATGCTACCTACCAAATTCATCTACCTTAAGCACCTGACCATTCGTATGATAACAGGATCGACCATTTCC
CGGCCATATGACTATTTCTCTCTGGTTTCTTTTATCAATGCATCTCCTTCCTTGGAGACTTTGATATTAAATGTGACTCT
ACGTATGGTGAATGAATCGATTTTCACGGATTCACAACTGAGACACATACCTGAACACCACCATGGCCACCTCAAGAGTG
TGAAGATCACTGGTTTCAGCTCTGCGAAGAGCTTGGTGGAACTAACATGTTATATCCTCAATAATGCGGTGTCACTTGAG
TGTCTTACATTGGATACCATTTATGGTCCTAGGTGTGATCAAGATAAGTATAGGCGGTGTTTTCCCATGATAGATGGTGT
TCTCACGGAAGCTCCAAGGGGGCTCGCGGCTATCAGAACATACATTGAGGATAAAGTTCCATCTACAGTTAATTTGACTG
TTCTGGAACCTTGCAGCCGGTGCCATGTTAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14216.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis