Browse Element(s) Details


Os.14215.1.S1_at

Description gb:AK121430.1
DB_XREF= gi:37991053
TID=Os.14215.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14215 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023136L12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023136L12, full insert sequence.
FL= gb:AK121430.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4037011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40330OsAffx.14216.1.S1_x_at11/114+23756979..23760327F-box domain containing protein, expressed
LOC_Os04g40330Os.9429.1.S1_at11/114+23756979..23760327F-box domain containing protein, expressed
LOC_Os04g40340Os.52304.1.S1_at8/114+23764935..23767303hypothetical protein
LOC_Os04g40350NANA4+23771794..23772611GRF zinc finger family protein
LOC_Os04g40360Os.14919.1.S1_at4/114+23773032..23778935transposon protein, putative, Mutator sub-class
LOC_Os04g40370Os.14215.1.S1_at11/114+23779729..23783138F-box domain containing protein, expressed
LOC_Os04g40370OsAffx.14216.1.S1_x_at6/114+23779729..23783138F-box domain containing protein, expressed
LOC_Os04g40380OsAffx.14217.1.S1_at11/114+23785892..23786530hypothetical protein
LOC_Os04g40390OsAffx.14218.1.S1_at11/114+23788209..23788910hypothetical protein
LOC_Os04g40400OsAffx.24628.1.S1_at2/114+23793996..23797755eukaryotic translation initiation factor 4B, putative, expressed
LOC_Os04g40410Os.56184.1.S1_at11/114+23799200..23800358NAR2.2, putative, expressed
LOC_Os04g40420Os.54193.1.S1_at10/114+23802393..23806881SWIRM domain containing protein, expressed
LOC_Os04g40430Os.18113.1.S1_x_at11/114+23807539..23809957Surfeit locus protein 2 containing protein, expressed
LOC_Os04g40430OsAffx.14219.1.S1_at11/114+23807539..23809957Surfeit locus protein 2 containing protein, expressed
LOC_Os04g40430Os.18113.1.S1_s_at11/114+23807539..23809957Surfeit locus protein 2 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14215.1.S1_at--1139--8671Chr04:23782546..23782569 (24 bp)
TGTGACTCAGGTACGTATGGTGCAT
LOC_Os04g40370
Os.14215.1.S1_at--39--9531Chr04:23782797..23782821 (25 bp)
TCTCACGGATGCTCCAAGAGGGCTT
LOC_Os04g40370
Os.14215.1.S1_at--132--1091Chr04:23782815..23782839 (25 bp)
AGGGCTTGCAGCTATCAGAACATAC
LOC_Os04g40370
Os.14215.1.S1_at--350--5351Chr04:23782910..23782934 (25 bp)
GAAGAGGGTGAACATCATCTCAATC
LOC_Os04g40370
Os.14215.1.S1_at--771--2091Chr04:23782921..23782945 (25 bp)
ACATCATCTCAATCGTGCAATGCCG
LOC_Os04g40370
Os.14215.1.S1_at--460--7351Chr04:23782935..23782959 (25 bp)
GTGCAATGCCGATTCCATTCAATTT
LOC_Os04g40370
Os.14215.1.S1_at--1117--8331Chr04:23782995..23783019 (25 bp)
GGCTGTGGCCCAATGTGCAATAGTT
LOC_Os04g40370
Os.14215.1.S1_at--475--5611Chr04:23783035..23783059 (25 bp)
GACAATGGACCAAGCTTTATCTCTG
LOC_Os04g40370
Os.14215.1.S1_at--868--8091Chr04:23783041..23783065 (25 bp)
GGACCAAGCTTTATCTCTGTATTAT
LOC_Os04g40370
Os.14215.1.S1_at--856--6811Chr04:23783080..23783104 (25 bp)
GTTTATTTTTTGCTGTACATGTATA
LOC_Os04g40370
Os.14215.1.S1_at--380--6531Chr04:23783112..23783136 (25 bp)
GATTTATATGTTTTTGTCCAAAGGT
LOC_Os04g40370
Target Sequence 
TGTGACTCAGGTACGTATGGTGCATGAATCGATTTTCACGGATTCACAACTGAGACACATCCCNTGGACACCGCCATGGC
CACNTCAAGAGTGTGAAGATCACTGGTTTCAGCTCTGCGAAGAGCTTGGTGGAACTGACATGTTATATCCTCAATAATGC
GGTGTCACTTGAGTGTCTTACATTGGATACCATTTATGGTCCTAGGTGTGATCAAGATAAGTATAGGCGGTGTTTTCCCA
TGATAGATGGTGTTCTCACGGATGCTCCAAGAGGGCTTGCAGCTATCAGAACATACATTGAGGATAAAGTTCCATCTACA
GTTAATTTGACTGTTCTGGAACCTTGCAGCCGGTGCCATGTTAGAAGAAGAGGGTGAACATCATCTCAATCGTGCAATGC
CGATTCCATTCAATTTTAGATGAACCAATATTTGTTTCCTGAACTATTTATGGCTGTGGCCCAATGTGCAATAGTTTAAT
TATCTTAGATGGACAATGGACCAAGCTTTATCTCTGTATTATCAGACCTGTTTAATGTTTATTTTTTGCTGTACATGTAT
AAGCTGAAGATTTATATGTTTTTGTCCAAAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14215.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis