Browse Element(s) Details


OsAffx.14219.1.S1_at

Description tigr:9632.m03840
TID=OsAffx.14219.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=SWISNF family transcription activator, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4043011/11Surfeit locus protein 2 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40370Os.14215.1.S1_at11/114+23779729..23783138F-box domain containing protein, expressed
LOC_Os04g40370OsAffx.14216.1.S1_x_at6/114+23779729..23783138F-box domain containing protein, expressed
LOC_Os04g40380OsAffx.14217.1.S1_at11/114+23785892..23786530hypothetical protein
LOC_Os04g40390OsAffx.14218.1.S1_at11/114+23788209..23788910hypothetical protein
LOC_Os04g40400OsAffx.24628.1.S1_at2/114+23793996..23797755eukaryotic translation initiation factor 4B, putative, expressed
LOC_Os04g40410Os.56184.1.S1_at11/114+23799200..23800358NAR2.2, putative, expressed
LOC_Os04g40420Os.54193.1.S1_at10/114+23802393..23806881SWIRM domain containing protein, expressed
LOC_Os04g40430Os.18113.1.S1_x_at11/114+23807539..23809957Surfeit locus protein 2 containing protein, expressed
LOC_Os04g40430OsAffx.14219.1.S1_at11/114+23807539..23809957Surfeit locus protein 2 containing protein, expressed
LOC_Os04g40430Os.18113.1.S1_s_at11/114+23807539..23809957Surfeit locus protein 2 containing protein, expressed
LOC_Os04g40440Os.49910.1.S1_at8/114+23813430..23816834Leucine Rich Repeat family protein, expressed
LOC_Os04g40450OsAffx.31464.1.S1_at1/114+23817574..23821989retrotransposon protein, putative, unclassified
LOC_Os04g40460Os.50432.1.S1_at5/114+23824785..23827959Cytochrome P450 family protein
LOC_Os04g40470Os.50432.1.S1_at11/114+23829975..23832047Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14219.1.S1_at--576--10391Chr04:23809881..23809905 (25 bp)
TTTTGATGTGAGAATGAACTGTGCT
LOC_Os04g40430
OsAffx.14219.1.S1_at--757--10771Chr04:23809883..23809907 (25 bp)
TTGATGTGAGAATGAACTGTGCTAC
LOC_Os04g40430
OsAffx.14219.1.S1_at--120--6271Chr04:23809885..23809909 (25 bp)
GATGTGAGAATGAACTGTGCTACTT
LOC_Os04g40430
OsAffx.14219.1.S1_at--886--771Chr04:23809886..23809910 (25 bp)
ATGTGAGAATGAACTGTGCTACTTG
LOC_Os04g40430
OsAffx.14219.1.S1_at--183--8671Chr04:23809887..23809911 (25 bp)
TGTGAGAATGAACTGTGCTACTTGT
LOC_Os04g40430
OsAffx.14219.1.S1_at--72--7371Chr04:23809888..23809912 (25 bp)
GTGAGAATGAACTGTGCTACTTGTC
LOC_Os04g40430
OsAffx.14219.1.S1_at--305--8911Chr04:23809889..23809913 (25 bp)
TGAGAATGAACTGTGCTACTTGTCC
LOC_Os04g40430
OsAffx.14219.1.S1_at--19--5951Chr04:23809890..23809914 (25 bp)
GAGAATGAACTGTGCTACTTGTCCT
LOC_Os04g40430
OsAffx.14219.1.S1_at--17--7331Chr04:23809901..23809925 (25 bp)
GTGCTACTTGTCCTATATTTATTCT
LOC_Os04g40430
OsAffx.14219.1.S1_at--182--9091Chr04:23809902..23809926 (25 bp)
TGCTACTTGTCCTATATTTATTCTT
LOC_Os04g40430
OsAffx.14219.1.S1_at--417--4851Chr04:23809903..23809927 (25 bp)
GCTACTTGTCCTATATTTATTCTTG
LOC_Os04g40430
Target Sequence 
TTTTGATGTGAGAATGAACTGTGCTACTTGTCCTATATTTATTCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14219.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis