Browse Element(s) Details


OsAffx.14217.1.S1_at

Description tigr:9632.m03836
TID=OsAffx.14217.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4038011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40340Os.52304.1.S1_at8/114+23764935..23767303hypothetical protein
LOC_Os04g40350NANA4+23771794..23772611GRF zinc finger family protein
LOC_Os04g40360Os.14919.1.S1_at4/114+23773032..23778935transposon protein, putative, Mutator sub-class
LOC_Os04g40370Os.14215.1.S1_at11/114+23779729..23783138F-box domain containing protein, expressed
LOC_Os04g40370OsAffx.14216.1.S1_x_at6/114+23779729..23783138F-box domain containing protein, expressed
LOC_Os04g40380OsAffx.14217.1.S1_at11/114+23785892..23786530hypothetical protein
LOC_Os04g40390OsAffx.14218.1.S1_at11/114+23788209..23788910hypothetical protein
LOC_Os04g40400OsAffx.24628.1.S1_at2/114+23793996..23797755eukaryotic translation initiation factor 4B, putative, expressed
LOC_Os04g40410Os.56184.1.S1_at11/114+23799200..23800358NAR2.2, putative, expressed
LOC_Os04g40420Os.54193.1.S1_at10/114+23802393..23806881SWIRM domain containing protein, expressed
LOC_Os04g40430Os.18113.1.S1_x_at11/114+23807539..23809957Surfeit locus protein 2 containing protein, expressed
LOC_Os04g40430OsAffx.14219.1.S1_at11/114+23807539..23809957Surfeit locus protein 2 containing protein, expressed
LOC_Os04g40430Os.18113.1.S1_s_at11/114+23807539..23809957Surfeit locus protein 2 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14217.1.S1_at--793--3931Chr04:23786466..23786490 (25 bp)
CGGCGATGCTGTACGCCAGCCGCGA
LOC_Os04g40380
OsAffx.14217.1.S1_at--875--3551Chr04:23786435..23786459 (25 bp)
CATCAAGGTCATCGTCACGGACGTA
LOC_Os04g40380
OsAffx.14217.1.S1_at--529--7091Chr04:23786422..23786446 (25 bp)
GTCACGGACGTAGAGCTCCGCCAGG
LOC_Os04g40380
OsAffx.14217.1.S1_at--196--3491Chr04:23786401..23786425 (25 bp)
CAGGCGCCCGCCTTGCTGGAGTTGC
LOC_Os04g40380
OsAffx.14217.1.S1_at--882--7731Chr04:23786349..23786373 (25 bp)
GGTGGGATCTGGTCCGTGACCACAA
LOC_Os04g40380
OsAffx.14217.1.S1_at--794--7371Chr04:23786334..23786358 (25 bp)
GTGACCACAAGCTTCGTCAGCTCGC
LOC_Os04g40380
OsAffx.14217.1.S1_at--867--8471Chr04:23786304..23786328 (25 bp)
TGGCGAACGAGATCGTCGTCATCGT
LOC_Os04g40380
OsAffx.14217.1.S1_at--596--4011Chr04:23786282..23786306 (25 bp)
CGTCGACGTTCTGGTGCCGATGCTC
LOC_Os04g40380
OsAffx.14217.1.S1_at--473--10611Chr04:23786274..23786298 (25 bp)
TTCTGGTGCCGATGCTCCGGGAGAA
LOC_Os04g40380
OsAffx.14217.1.S1_at--809--9251Chr04:23786064..23786247 (25 bp)
TCCTCCTTCAAGTTCGCGACAAGGT
LOC_Os04g40380
OsAffx.14217.1.S1_at--31--1871Chr04:23785968..23785992 (25 bp)
ACGACCCGGAGTTCGGTGGCGATGA
LOC_Os04g40380
Target Sequence 
CGGCGATGCTGTACGCCAGCCGCGACGACCCCATCAAGGTCATCGTCACGGACGTAGAGCTCCGCCAGGCGCCCGCCTTG
CTGGAGTTGCTGACGAAGGCCAGTCGGCTCCCGCGCGGGTGGGATCTGGTCCGTGACCACAAGCTTCGTCAGCTCGCGCG
CCTGGCGAACGAGATCGTCGTCATCGTCGACGTTCTGGTGCCGATGCTCCGGGAGAACGCCCTCCACCACGACGCCGGCC
GCCTCCTCCTTCAAGTTCGCGACAAGGTCGCCGACCTCAACACCATGGTGGTCTTCATCCCCGAGCTCGGCCTCGACGAT
GGACCGGACGGCGGCGAGGACGACCCGGAGTTCGGTGGCGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14217.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis