Browse Element(s) Details


Os.54193.1.S1_at

Description gb:AK102453.1
DB_XREF= gi:32987662
TID=Os.54193.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54193 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033093P09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033093P09, full insert sequence.
FL= gb:AK102453.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4042010/11SWIRM domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40360Os.14919.1.S1_at4/114+23773032..23778935transposon protein, putative, Mutator sub-class
LOC_Os04g40370Os.14215.1.S1_at11/114+23779729..23783138F-box domain containing protein, expressed
LOC_Os04g40370OsAffx.14216.1.S1_x_at6/114+23779729..23783138F-box domain containing protein, expressed
LOC_Os04g40380OsAffx.14217.1.S1_at11/114+23785892..23786530hypothetical protein
LOC_Os04g40390OsAffx.14218.1.S1_at11/114+23788209..23788910hypothetical protein
LOC_Os04g40400OsAffx.24628.1.S1_at2/114+23793996..23797755eukaryotic translation initiation factor 4B, putative, expressed
LOC_Os04g40410Os.56184.1.S1_at11/114+23799200..23800358NAR2.2, putative, expressed
LOC_Os04g40420Os.54193.1.S1_at10/114+23802393..23806881SWIRM domain containing protein, expressed
LOC_Os04g40430Os.18113.1.S1_x_at11/114+23807539..23809957Surfeit locus protein 2 containing protein, expressed
LOC_Os04g40430OsAffx.14219.1.S1_at11/114+23807539..23809957Surfeit locus protein 2 containing protein, expressed
LOC_Os04g40430Os.18113.1.S1_s_at11/114+23807539..23809957Surfeit locus protein 2 containing protein, expressed
LOC_Os04g40440Os.49910.1.S1_at8/114+23813430..23816834Leucine Rich Repeat family protein, expressed
LOC_Os04g40450OsAffx.31464.1.S1_at1/114+23817574..23821989retrotransposon protein, putative, unclassified
LOC_Os04g40460Os.50432.1.S1_at5/114+23824785..23827959Cytochrome P450 family protein
LOC_Os04g40470Os.50432.1.S1_at11/114+23829975..23832047Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006338biological_processchromatin remodeling
GO:0016514cellular_componentSWI/SNF complex
GO:0016585cellular_componentchromatin remodeling complex
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54193.1.S1_at--568--2851Chr04:23806506..23806530 (25 bp)
AAGTCGGTTAGATCTCCATGAGGGA
LOC_Os04g40420
Os.54193.1.S1_at--897--4031Chr04:23806572..23806596 (25 bp)
CGAGTAACATCCCTATTCCTTAGAG
LOC_Os04g40420
Os.54193.1.S1_at--846--10731Chr04:23806600..23806624 (25 bp)
TTGACTGGAGTCGATTATCCCTCCT
LOC_Os04g40420
Os.54193.1.S1_at--345--6411Chr04:23806627..23806651 (25 bp)
GATCTGCCTCTCCATAGAGCAGTCA
LOC_Os04g40420
Os.54193.1.S1_at--995--5931Chr04:23806643..23806667 (25 bp)
GAGCAGTCATCTAGCAGTTTAACAT
LOC_Os04g40420
Os.54193.1.S1_at--635--6451Chr04:23806737..23806761 (25 bp)
GATCACATCGATCCTCTGTAGTTTG
LOC_Os04g40420
Os.54193.1.S1_at--909--6891Chr04:23806761..23806785 (25 bp)
GTATCATCCTATGCGATTGCACGTG
LOC_Os04g40420
Os.54193.1.S1_at--484--7411Chr04:23806783..23806807 (25 bp)
GTGATTGCTCCGTTATACTATCCAA
LOC_Os04g40420
Os.54193.1.S1_at--980--9071Chr04:23806828..23806852 (25 bp)
TGCTAATAGCTTCCTGTACCTGTCT
LOC_Os04g40420
Os.54193.1.S1_at--703--9971Chr04:23806844..23806868 (25 bp)
TACCTGTCTACATTTCGTTGATTTC
LOC_Os04g40420
Os.54193.1.S1_at--792--8811Chr04:23806872..23806896 (25 bp)
TGTTGGGATGTGCAAATCTTCCTCC
NONE
Target Sequence 
AAGTCGGTTAGATCTCCATGAGGGAGCATTGGAGGTTGGGATATCTGTACTGAGGGATGTGCTGTTCGAGTAACATCCCT
ATTCCTTAGAGAAGTTGACTGGAGTCGATTATCCCTCCTCTGATCTGCCTCTCCATAGAGCAGTCATCTAGCAGTTTAAC
ATTGTGGTGTCAGAGCGTGGCTGTAAATGTGCTGATTGAGCTTTGGGTTGATCTCAAAATTTTGCGTTTGAGATCACATC
GATCCTCTGTAGTTTGTATCATCCTATGCGATTGCACGTGATTGCTCCGTTATACTATCCAACTAGGTTAGACAAGTAGT
GTTGCTAATAGCTTCCTGTACCTGTCTACATTTCGTTGATTTCATTTGTTGGGATGTGCAAATCTTCCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54193.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis