Browse Element(s) Details


Os.49910.1.S1_at

Description gb:AK119334.1
DB_XREF= gi:37988957
TID=Os.49910.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49910 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-131-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-131-C04, full insert sequence.
FL= gb:AK119334.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g404408/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40390OsAffx.14218.1.S1_at11/114+23788209..23788910hypothetical protein
LOC_Os04g40400OsAffx.24628.1.S1_at2/114+23793996..23797755eukaryotic translation initiation factor 4B, putative, expressed
LOC_Os04g40410Os.56184.1.S1_at11/114+23799200..23800358NAR2.2, putative, expressed
LOC_Os04g40420Os.54193.1.S1_at10/114+23802393..23806881SWIRM domain containing protein, expressed
LOC_Os04g40430Os.18113.1.S1_x_at11/114+23807539..23809957Surfeit locus protein 2 containing protein, expressed
LOC_Os04g40430OsAffx.14219.1.S1_at11/114+23807539..23809957Surfeit locus protein 2 containing protein, expressed
LOC_Os04g40430Os.18113.1.S1_s_at11/114+23807539..23809957Surfeit locus protein 2 containing protein, expressed
LOC_Os04g40440Os.49910.1.S1_at8/114+23813430..23816834Leucine Rich Repeat family protein, expressed
LOC_Os04g40450OsAffx.31464.1.S1_at1/114+23817574..23821989retrotransposon protein, putative, unclassified
LOC_Os04g40460Os.50432.1.S1_at5/114+23824785..23827959Cytochrome P450 family protein
LOC_Os04g40470Os.50432.1.S1_at11/114+23829975..23832047Cytochrome P450 family protein, expressed
LOC_Os04g40490Os.56341.1.S1_at11/114+23835790..23839863Cellulase containing protein, expressed
LOC_Os04g40500Os.56341.1.S1_at1/114+23840950..23844414glycosyl hydrolase family 5 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49910.1.S1_at--1026--11Chr04:23816343..23816367 (25 bp)
ATTGGAAGGCTCACCTCGCTAAGAG
LOC_Os04g40440
Os.49910.1.S1_at--184--6151Chr04:23816365..23816389 (25 bp)
GAGGTCTCAACCTGTCGCATAATGC
LOC_Os04g40440
Os.49910.1.S1_at--1106--10571NONE
TTCTCAGCTCAGTGGATAGGCGCAG
NONE
Os.49910.1.S1_at--892--271NONE
ATAGGCGCAGCTTGAATCGCTCGAT
NONE
Os.49910.1.S1_at--897--6411NONE
GATCTCTCTTTGAACCAGCTTTGTG
NONE
Os.49910.1.S1_at--300--10851Chr04:23816487..23816511 (25 bp)
TTGGTGTCTTTAACTTCTGTCGGCT
LOC_Os04g40440
Os.49910.1.S1_at--326--7191Chr04:23816505..23816529 (25 bp)
GTCGGCTGGTTGAACTTGTCCTACA
LOC_Os04g40440
Os.49910.1.S1_at--7--71Chr04:23816547..23816571 (25 bp)
ATTCCGCAGGGAGGTCAATTTCAGA
LOC_Os04g40440
Os.49910.1.S1_at--648--4731Chr04:23816621..23816645 (25 bp)
GCTGTCTATTCGGTGCAATGGTTCG
LOC_Os04g40440
Os.49910.1.S1_at--296--8011Chr04:23816684..23816708 (25 bp)
GGAGGCCCGGACAGAGACCATTGTA
LOC_Os04g40440
Os.49910.1.S1_at--580--211Chr04:23816744..23816768 (25 bp)
ATTTGCAATGGCCTTCTTGTTCCAA
LOC_Os04g40440
Target Sequence 
ATTGGAAGGCTCACCTCGCTAAGAGGTCTCAACCTGTCGCATAATGCCTTCACCGGAACAATCCCTTCTCAGCTCAGTGG
ATAGGCGCAGCTTGAATCGCTCGATCTCTCTTTGAACCAGCTTTGTGGGGAGATCCCAGAGGTGTTGGTGTCTTTAACTT
CTGTCGGCTGGTTGAACTTGTCCTACAATCGTTTGGAGGGTGCTATTCCGCAGGGAGGTCAATTTCAGACGTTTGGAAGT
AGCTCATTTGAAGGGAATGCCGCCCTATGCGGCAAACCGCTGTCTATTCGGTGCAATGGTTCGAATGCAGGGCCCCCTTC
GTTGGAGCACAGTGAGAGCTGGGAGGCCCGGACAGAGACCATTGTACTGTATATTTCCGTTGGATCAGGGTTCGGTTTGG
GATTTGCAATGGCCTTCTTGTTCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49910.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis