Browse Element(s) Details


Os.18113.1.S1_s_at

Description gb:AK068996.1
DB_XREF= gi:32979020
TID=Os.18113.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18113 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023001A15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023001A15, full insert sequence.
FL= gb:AK068996.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4043011/11Surfeit locus protein 2 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40370Os.14215.1.S1_at11/114+23779729..23783138F-box domain containing protein, expressed
LOC_Os04g40370OsAffx.14216.1.S1_x_at6/114+23779729..23783138F-box domain containing protein, expressed
LOC_Os04g40380OsAffx.14217.1.S1_at11/114+23785892..23786530hypothetical protein
LOC_Os04g40390OsAffx.14218.1.S1_at11/114+23788209..23788910hypothetical protein
LOC_Os04g40400OsAffx.24628.1.S1_at2/114+23793996..23797755eukaryotic translation initiation factor 4B, putative, expressed
LOC_Os04g40410Os.56184.1.S1_at11/114+23799200..23800358NAR2.2, putative, expressed
LOC_Os04g40420Os.54193.1.S1_at10/114+23802393..23806881SWIRM domain containing protein, expressed
LOC_Os04g40430Os.18113.1.S1_x_at11/114+23807539..23809957Surfeit locus protein 2 containing protein, expressed
LOC_Os04g40430OsAffx.14219.1.S1_at11/114+23807539..23809957Surfeit locus protein 2 containing protein, expressed
LOC_Os04g40430Os.18113.1.S1_s_at11/114+23807539..23809957Surfeit locus protein 2 containing protein, expressed
LOC_Os04g40440Os.49910.1.S1_at8/114+23813430..23816834Leucine Rich Repeat family protein, expressed
LOC_Os04g40450OsAffx.31464.1.S1_at1/114+23817574..23821989retrotransposon protein, putative, unclassified
LOC_Os04g40460Os.50432.1.S1_at5/114+23824785..23827959Cytochrome P450 family protein
LOC_Os04g40470Os.50432.1.S1_at11/114+23829975..23832047Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18113.1.S1_s_at--836--10251Chr04:23809763..23809787 (25 bp)
TTTGTATTAATTGGTTTGCTTTTAG
LOC_Os04g40430
Os.18113.1.S1_s_at--686--10191Chr04:23809767..23809791 (25 bp)
TATTAATTGGTTTGCTTTTAGTTAG
LOC_Os04g40430
Os.18113.1.S1_s_at--262--8671Chr04:23809800..23809824 (25 bp)
TGTGTAGCCCTATCGCTGCACCTTT
LOC_Os04g40430
Os.18113.1.S1_s_at--721--10131Chr04:23809810..23809834 (25 bp)
TATCGCTGCACCTTTCAGTGGTATA
LOC_Os04g40430
Os.18113.1.S1_s_at--503--511Chr04:23809811..23809835 (25 bp)
ATCGCTGCACCTTTCAGTGGTATAC
LOC_Os04g40430
Os.18113.1.S1_s_at--422--9351Chr04:23809812..23809836 (25 bp)
TCGCTGCACCTTTCAGTGGTATACT
LOC_Os04g40430
Os.18113.1.S1_s_at--400--4751Chr04:23809814..23809838 (25 bp)
GCTGCACCTTTCAGTGGTATACTAT
LOC_Os04g40430
Os.18113.1.S1_s_at--569--9031Chr04:23809816..23809840 (25 bp)
TGCACCTTTCAGTGGTATACTATTG
LOC_Os04g40430
Os.18113.1.S1_s_at--1138--3351Chr04:23809818..23809842 (25 bp)
CACCTTTCAGTGGTATACTATTGCA
LOC_Os04g40430
Os.18113.1.S1_s_at--958--9053Chr12:5913673..5913843 (25 bp)
TGCATTAGTTAATTCCTGTGATTTT
NONE
Os.18113.1.S1_s_at--813--10431Chr04:23809864..23809888 (25 bp)
TTAGTTAATTCCTGTGATTTTGATG
LOC_Os04g40430
Target Sequence 
TTTGTATTAATTGGTTTGCTTTTAGTTAGTGCTTCTCTGTGTAGCCCTATCGCTGCACCTTTCAGTGGTATACTATTGCA
TGACAATTCTCTATACTTGCATTAGTTAATTCCTGTGATTTTGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18113.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis