Browse Element(s) Details


Os.56184.1.S1_at

Description gb:AK109571.1
DB_XREF= gi:32994780
TID=Os.56184.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56184 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-132-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-132-B10, full insert sequence.
FL= gb:AK109571.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4041011/11NAR2.2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40360Os.14919.1.S1_at4/114+23773032..23778935transposon protein, putative, Mutator sub-class
LOC_Os04g40370Os.14215.1.S1_at11/114+23779729..23783138F-box domain containing protein, expressed
LOC_Os04g40370OsAffx.14216.1.S1_x_at6/114+23779729..23783138F-box domain containing protein, expressed
LOC_Os04g40380OsAffx.14217.1.S1_at11/114+23785892..23786530hypothetical protein
LOC_Os04g40390OsAffx.14218.1.S1_at11/114+23788209..23788910hypothetical protein
LOC_Os04g40400OsAffx.24628.1.S1_at2/114+23793996..23797755eukaryotic translation initiation factor 4B, putative, expressed
LOC_Os04g40410Os.56184.1.S1_at11/114+23799200..23800358NAR2.2, putative, expressed
LOC_Os04g40420Os.54193.1.S1_at10/114+23802393..23806881SWIRM domain containing protein, expressed
LOC_Os04g40430Os.18113.1.S1_x_at11/114+23807539..23809957Surfeit locus protein 2 containing protein, expressed
LOC_Os04g40430OsAffx.14219.1.S1_at11/114+23807539..23809957Surfeit locus protein 2 containing protein, expressed
LOC_Os04g40430Os.18113.1.S1_s_at11/114+23807539..23809957Surfeit locus protein 2 containing protein, expressed
LOC_Os04g40440Os.49910.1.S1_at8/114+23813430..23816834Leucine Rich Repeat family protein, expressed
LOC_Os04g40450OsAffx.31464.1.S1_at1/114+23817574..23821989retrotransposon protein, putative, unclassified
LOC_Os04g40460Os.50432.1.S1_at5/114+23824785..23827959Cytochrome P450 family protein

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56184.1.S1_at--853--8371Chr04:23799772..23799796 (25 bp)
GGCGAGGACGCCATCACCGTGACAT
LOC_Os04g40410
Os.56184.1.S1_at--859--4431Chr04:23799763..23799787 (25 bp)
GCCATCACCGTGACATGGTCGCTGA
LOC_Os04g40410
Os.56184.1.S1_at--55--5191Chr04:23799636..23799660 (25 bp)
GCAAGGCCCACGACGACCTGAGCAA
LOC_Os04g40410
Os.56184.1.S1_at--691--7411Chr04:23799320..23799344 (25 bp)
GTGATTGTGGTTTGCTTGTGTTAGT
LOC_Os04g40410
Os.56184.1.S1_at--895--4931Chr04:23799307..23799331 (25 bp)
GCTTGTGTTAGTAGTCTGTACAATT
LOC_Os04g40410
Os.56184.1.S1_at--233--51Chr04:23799285..23799309 (25 bp)
ATTGTAATGTGTGACTGTGTACGAC
LOC_Os04g40410
Os.56184.1.S1_at--712--7371Chr04:23799275..23799299 (25 bp)
GTGACTGTGTACGACAGCACGGAGT
LOC_Os04g40410
Os.56184.1.S1_at--186--2151Chr04:23799262..23799286 (25 bp)
ACAGCACGGAGTGTGTCTACAGCGC
LOC_Os04g40410
Os.56184.1.S1_at--239--6131Chr04:23799254..23799278 (25 bp)
GAGTGTGTCTACAGCGCCCAGCACA
LOC_Os04g40410
Os.56184.1.S1_at--969--1471Chr04:23799235..23799259 (25 bp)
AGCACACACACCTCCGTATGTTCAA
LOC_Os04g40410
Os.56184.1.S1_at--816--6912Chr05:4083191..4083210 (20 bp)
GTATGTTCAACCTACAAAACCAACG
NONE
Target Sequence 
GGCGAGGACGCCATCACCGTGACATGGTCGCTGAACGCGACGNCGGCGGCGGCGGCGGCCGGGGCGGATGCCGGCTACAA
GGCGGTGAAGGTGACCCTGTGCTACGCGCCGGCGAGCCAGGTGGGCCGCGGGTGGCGCAAGGCCCACGACGACCTGAGCA
AGGACAAGGCGTGTCAGTTNAAGATCGNCCAGCAGCCGTACGACGGNGCCGGCAAGTTCNGAGTACACGGTGGCACGCGA
CGTNCCGACGGCGTCGTACTACGTGCGCGCCTACGCGCTCGACGCGTCGGGGGCGCGGGTGGCCTATGGCGAGACGGCGC
CCTCGGCCAGCTTCGCCGTCGCGGGCATCACCGGCGTCACCGCGTCCATCGAGGTCGCCGCCGGCGTGCTCTCCGCGTTC
TCCGTCGCCGCGCTCGCCGTCTTCCTCGTCCTCGAGAACAAGAAGAAGAACAAGTGATTGTGGTTTGCTTGTGTTAGTAG
TCTGTACAATTGTAATGTGTGACTGTGTACGACAGCACGGAGTGTGTCTACAGCGCCCAGCACACACACCTCCGTATGTT
CAACCTACAAAACCAACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56184.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis