Browse Element(s) Details


Os.52304.1.S1_at

Description gb:AK066264.1
DB_XREF= gi:32976282
TID=Os.52304.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52304 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013059K12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013059K12, full insert sequence.
FL= gb:AK066264.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g403408/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40290Os.54640.1.S1_at6/114+23736457..23740570ATPase, AAA family protein
LOC_Os04g40290Os.56299.1.S1_at1/114+23736457..23740570ATPase, AAA family protein
LOC_Os04g40290Os.49200.2.S1_at1/114+23736457..23740570ATPase, AAA family protein
LOC_Os04g40300Os.49160.1.S1_at11/114+23740972..23744231transglutaminase, putative, expressed
LOC_Os04g40310Os.16333.1.S1_at11/114+23744901..23748682isocitrate dehydrogenase, NAD-dependent family protein, expressed
LOC_Os04g40320Os.27286.1.S1_at10/114+23749115..23753127expressed protein
LOC_Os04g40330OsAffx.14216.1.S1_x_at11/114+23756979..23760327F-box domain containing protein, expressed
LOC_Os04g40330Os.9429.1.S1_at11/114+23756979..23760327F-box domain containing protein, expressed
LOC_Os04g40340Os.52304.1.S1_at8/114+23764935..23767303hypothetical protein
LOC_Os04g40350NANA4+23771794..23772611GRF zinc finger family protein
LOC_Os04g40360Os.14919.1.S1_at4/114+23773032..23778935transposon protein, putative, Mutator sub-class
LOC_Os04g40370Os.14215.1.S1_at11/114+23779729..23783138F-box domain containing protein, expressed
LOC_Os04g40370OsAffx.14216.1.S1_x_at6/114+23779729..23783138F-box domain containing protein, expressed
LOC_Os04g40380OsAffx.14217.1.S1_at11/114+23785892..23786530hypothetical protein
LOC_Os04g40390OsAffx.14218.1.S1_at11/114+23788209..23788910hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52304.1.S1_at--297--8973Chr12:15965955..15965979 (25 bp)
TGAAATGTTATGTTTGCCCCTTCTC
NONE
Os.52304.1.S1_at--824--4533Chr12:15965970..15965994 (25 bp)
GCCCCTTCTCCAAAGCTACAGAGAT
NONE
Os.52304.1.S1_at--571--6053Chr12:15965990..15966011 (22 bp)
GAGATATTTCAACACGGTTTCTTAT
NONE
Os.52304.1.S1_at--780--7012Chr03:21911899..21911923 (25 bp)
GTACTACCTACTATATACTCATTGT
NONE
Os.52304.1.S1_at--913--9212Chr06:11055177..11055293 (25 bp)
TCCAAAGATGCCCTGTATTCTGTAG
NONE
Os.52304.1.S1_at--335--7672Chr03:21911969..21911993 (25 bp)
GGGATACCTCAAAATTCTGTGCCAT
NONE
Os.52304.1.S1_at--259--8012Chr03:21912002..21912026 (25 bp)
GGAGGTACCAATCGTCTACTAATCT
NONE
Os.52304.1.S1_at--486--3132Chr03:21912070..21912094 (25 bp)
AATTTTTCTTTGTGCTGCAGTGCTA
NONE
Os.52304.1.S1_at--1041--9112Chr03:21912145..21912169 (25 bp)
TGCTGCAATTCTCATATCACCTAAT
NONE
Os.52304.1.S1_at--922--6792Chr03:21912177..21912201 (25 bp)
GTTTTTTCTAACCTATACTCCACAT
NONE
Os.52304.1.S1_at--110--9793Chr12:15966343..15966367 (25 bp)
TAAGATCCATTGTCCTCTGTCATTG
NONE
Target Sequence 
TGAAATGTTATGTTTGCCCCTTCTCCAAAGCTACAGAGATATTTCAACACGGTTTCTTATATGAGTATTTGTACTACCTA
CTATATACTCATTGTGTAGCAATATATGGATGACATCCAAAGATGCCCTGTATTCTGTAGGGGATACCTCAAAATTCTGT
GCCATTATGCAAAGGAGGTACCAATCGTCTACTAATCTGTTGTAAGTGATGTACTGTTGTTTTTATTGAGCTAAAGCACT
AAATTTTTCTTTGTGCTGCAGTGCTATAGATGAGAAAAGATTCAATTAGTTCATGACGAAGGTATCTATGAGAAAATGCT
GCAATTCTCATATCACCTAATGATTGTTGTTTTTTCTAACCTATACTCCACATTATGTAAGATCCATTGTCCTCTGTCAT
TG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52304.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis