Browse Element(s) Details


Os.49160.1.S1_at

Description gb:AK071348.1
DB_XREF= gi:32981371
TID=Os.49160.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49160 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-042-H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023092D06, full insert sequence.
FL= gb:AK104848.1 gb:AK071348.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4030011/11transglutaminase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40240NANA4+23715163..23717382transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g40250Os.53658.1.S1_at8/114+23720171..23722903hypothetical protein
LOC_Os04g40260Os.54774.1.S1_x_at2/114+23725041..23728661retrotransposon, putative, centromere-specific
LOC_Os04g40260Os.54774.1.S1_at1/114+23725041..23728661retrotransposon, putative, centromere-specific
LOC_Os04g40270OsAffx.14215.1.S1_at11/114+23730035..23730310hypothetical protein
LOC_Os04g40279OsAffx.10250.3.S1_at4/114+23732589..23732974NA
LOC_Os04g40290Os.54640.1.S1_at6/114+23736457..23740570ATPase, AAA family protein
LOC_Os04g40290Os.56299.1.S1_at1/114+23736457..23740570ATPase, AAA family protein
LOC_Os04g40290Os.49200.2.S1_at1/114+23736457..23740570ATPase, AAA family protein
LOC_Os04g40300Os.49160.1.S1_at11/114+23740972..23744231transglutaminase, putative, expressed
LOC_Os04g40310Os.16333.1.S1_at11/114+23744901..23748682isocitrate dehydrogenase, NAD-dependent family protein, expressed
LOC_Os04g40320Os.27286.1.S1_at10/114+23749115..23753127expressed protein
LOC_Os04g40330OsAffx.14216.1.S1_x_at11/114+23756979..23760327F-box domain containing protein, expressed
LOC_Os04g40330Os.9429.1.S1_at11/114+23756979..23760327F-box domain containing protein, expressed
LOC_Os04g40340Os.52304.1.S1_at8/114+23764935..23767303hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49160.1.S1_at--879--291Chr04:23741514..23741538 (25 bp)
ATACGCGGGCTATCCTGGTTATCCA
LOC_Os04g40300
Os.49160.1.S1_at--915--9031Chr04:23741487..23741511 (25 bp)
TGCAGGGTACACACAGGCCGCTTTG
LOC_Os04g40300
Os.49160.1.S1_at--314--10251Chr04:23741466..23741490 (25 bp)
TTTGCCCGGTTATCCTAGTGCGTAT
LOC_Os04g40300
Os.49160.1.S1_at--317--10151Chr04:23741363..23741387 (25 bp)
TATCCTGCTGGAGTTGTTCAGTCAA
LOC_Os04g40300
Os.49160.1.S1_at--865--3391Chr04:23741308..23741332 (25 bp)
CAGCTACTTATCCTGTCGCATACGA
LOC_Os04g40300
Os.49160.1.S1_at--969--2891Chr04:23741258..23741282 (25 bp)
AATCGTAGTTTCAGTCTCAGACCCA
LOC_Os04g40300
Os.49160.1.S1_at--44--871Chr04:23741165..23741189 (25 bp)
ATGGCTCTAGTTCGTTTTTCTTGTA
LOC_Os04g40300
Os.49160.1.S1_at--777--3611Chr04:23741146..23741170 (25 bp)
CTTGTAGATTCCTTCCCTATACATT
LOC_Os04g40300
Os.49160.1.S1_at--894--5231Chr04:23741024..23741048 (25 bp)
GAATCTCTGTAATTCCCGGTTAAGA
LOC_Os04g40300
Os.49160.1.S1_at--27--3191Chr04:23740988..23741012 (25 bp)
CAATTTTCTGAATGCTTTAGCTCCA
LOC_Os04g40300
Os.49160.1.S1_at--435--10351Chr04:23740973..23740997 (25 bp)
TTTAGCTCCAGTGCTCTTGAGACAT
LOC_Os04g40300
Target Sequence 
ATACGCGGGCTATCCTGGTTATCCAGTTGCAGGGTACACACAGGCCGCTTTGCCCGGTTATCCTAGTGCGTATGCTGCAC
CGCAGCAACCAATAAGCAGTGGTGTAGCTACAGATGTTGCAAGCATGTATGGNGCGATCAGTAGTGCTGGATATCCTGCT
GGAGTTGTTCAGTCAAGCAGTGGAGCTGCCAATGCAGGACAAGCACCAGCTACTTATCCTGTCGCATACGANCCAACCAG
AGCAGGCCAGAGGTGAAATCGTAGTTTCAGTCTCAGACCCAAATCACTATTTGCTAAACCCATTTTGTGGTGTAGCTGTN
GTAAGATCCTTGGAGAGGCCAACAACNGCATGGCTCTAGTTCGTTTTTCTTGTAGATTCCTTCCCTATACATTTTAGCGG
TCAATGAAAATTAGTTGTATATCGAATTGCTGCTNCTTGGTTCGANACTTGAATTTAATTAGTTGTANACCGAATAGATC
ACGNNCAACTTGAATCTCTGTAATTCCCGGTTAAGAACGACACCNGGCAATTTTCTGAATGCTTTAGCTCCAGTGCTCTT
GAGACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49160.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis