Browse Element(s) Details


OsAffx.14215.1.S1_at

Description tigr:9632.m03824
TID=OsAffx.14215.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4027011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40210NANA4+23704411..23705266transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g40220Os.27102.1.S1_x_at1/114+23708417..23711214transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g40230NANA4+23713603..23714869transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g40240NANA4+23715163..23717382transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g40250Os.53658.1.S1_at8/114+23720171..23722903hypothetical protein
LOC_Os04g40260Os.54774.1.S1_x_at2/114+23725041..23728661retrotransposon, putative, centromere-specific
LOC_Os04g40260Os.54774.1.S1_at1/114+23725041..23728661retrotransposon, putative, centromere-specific
LOC_Os04g40270OsAffx.14215.1.S1_at11/114+23730035..23730310hypothetical protein
LOC_Os04g40279OsAffx.10250.3.S1_at4/114+23732589..23732974NA
LOC_Os04g40290Os.54640.1.S1_at6/114+23736457..23740570ATPase, AAA family protein
LOC_Os04g40290Os.56299.1.S1_at1/114+23736457..23740570ATPase, AAA family protein
LOC_Os04g40290Os.49200.2.S1_at1/114+23736457..23740570ATPase, AAA family protein
LOC_Os04g40300Os.49160.1.S1_at11/114+23740972..23744231transglutaminase, putative, expressed
LOC_Os04g40310Os.16333.1.S1_at11/114+23744901..23748682isocitrate dehydrogenase, NAD-dependent family protein, expressed
LOC_Os04g40320Os.27286.1.S1_at10/114+23749115..23753127expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14215.1.S1_at--645--3571Chr04:23730253..23730277 (25 bp)
CATACGATGATGAGCCTGTGCGGCC
LOC_Os04g40270
OsAffx.14215.1.S1_at--5--1891Chr04:23730250..23730274 (25 bp)
ACGATGATGAGCCTGTGCGGCCATC
LOC_Os04g40270
OsAffx.14215.1.S1_at--349--711Chr04:23730247..23730271 (25 bp)
ATGATGAGCCTGTGCGGCCATCACG
LOC_Os04g40270
OsAffx.14215.1.S1_at--1140--1671Chr04:23730241..23730265 (25 bp)
AGCCTGTGCGGCCATCACGTCAAGG
LOC_Os04g40270
OsAffx.14215.1.S1_at--553--8671Chr04:23730237..23730261 (25 bp)
TGTGCGGCCATCACGTCAAGGGCAC
LOC_Os04g40270
OsAffx.14215.1.S1_at--939--5011Chr04:23730182..23730206 (25 bp)
GCAGGTCAAAGAGGTGGACAGATAT
LOC_Os04g40270
OsAffx.14215.1.S1_at--259--3291Chr04:23730176..23730200 (25 bp)
CAAAGAGGTGGACAGATATATTCAC
LOC_Os04g40270
OsAffx.14215.1.S1_at--498--1431Chr04:23730149..23730173 (25 bp)
AGAAGCAACAACTAGCGACGGTGGC
LOC_Os04g40270
OsAffx.14215.1.S1_at--895--5371Chr04:23730148..23730172 (25 bp)
GAAGCAACAACTAGCGACGGTGGCG
LOC_Os04g40270
OsAffx.14215.1.S1_at--215--4511Chr04:23730109..23730133 (25 bp)
GCCGAGGCAGAAGGACGTGGGTCAG
LOC_Os04g40270
OsAffx.14215.1.S1_at--494--7811Chr04:23730090..23730114 (25 bp)
GGTCAGAGGAGAGCAGCAGTTGGCG
LOC_Os04g40270
Target Sequence 
CATACGATGATGAGCCTGTGCGGCCATCACGTCAAGGGCACCGCCGGTCGCCGCGGCGTCGGGTGGAGGAGGCAGGTCAA
AGAGGTGGACAGATATATTCACCAAGAAGCAACAACTAGCGACGGTGGCGGAGGAGAAGGATCAGCCGAGGCAGAAGGAC
GTGGGTCAGAGGAGAGCAGCAGTTGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14215.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis