Browse Element(s) Details


Os.9411.1.S1_at

Description gb:AU091954
DB_XREF= gi:8404600
DB_XREF=AU091954
CLONE=E50149
TID=Os.9411.1
CNT=6
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.9411 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_187425.1 (A.thaliana) putative coated vesicle membrane protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3296811/11emp24/gp25L/p24 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32948Os.2236.1.S1_at9/119+19652979..19659355Agamous-like MADS box protein AGL9 homolog, putative, expressed
LOC_Os09g32952Os.57081.1.S1_at11/119+19662398..19664857L-ascorbate oxidase precursor, putative, expressed
LOC_Os09g32956Os.10442.1.S2_at1/119+19666586..19667385hypothetical protein
LOC_Os09g32960Os.7773.1.S1_at11/119+19670842..19673054expressed protein
LOC_Os09g32964Os.11559.1.S1_at11/119+19674158..19676631Peroxidase 35 precursor, putative, expressed
LOC_Os09g32968Os.9411.1.S1_at11/119+19678026..19680933emp24/gp25L/p24 family protein, putative, expressed
LOC_Os09g32972OsAffx.26564.1.S1_at2/119+19681668..19682492hypothetical protein
LOC_Os09g32976Os.37882.1.S1_at11/119+19683255..1968546260S ribosomal protein L7a, putative, expressed
LOC_Os09g32980OsAffx.22608.3.S1_x_at4/119+19686876..19688776retrotransposon protein, putative, LINE subclass
LOC_Os09g32980OsAffx.22608.3.S1_at3/119+19686876..19688776retrotransposon protein, putative, LINE subclass
LOC_Os09g32984NANA9+19691115..19691531Auxin responsive protein
LOC_Os09g32988Os.52095.2.S1_at9/119+19693025..19695333Pollen proteins Ole e I family protein, expressed
LOC_Os09g33450Os.17295.1.S1_at11/119+19701631..19706208DHHC zinc finger domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0016020cellular_componentmembrane
GO:0008320molecular_functionprotein carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9411.1.S1_at--3--10311Chr09:19679083..19679107 (25 bp)
TTTCGTATTATGACCAGCATGCCAA
LOC_Os09g32968
Os.9411.1.S1_at--448--5411Chr09:19678935..19678959 (25 bp)
GAAGCCCTCTACAACATTCAGTTTG
LOC_Os09g32968
Os.9411.1.S1_at--974--5491Chr09:19678911..19678935 (25 bp)
GAACAGCACTGGTTGGAGGCCCAAA
LOC_Os09g32968
Os.9411.1.S1_at--625--6131Chr09:19678432..19678456 (25 bp)
GAGGGCAGTTCACAAGGCATTCTTT
LOC_Os09g32968
Os.9411.1.S1_at--521--4411Chr09:19678386..19678410 (25 bp)
GCCAGTGTTGTGCAGGTCTACCTAC
LOC_Os09g32968
Os.9411.1.S1_at--632--3151Chr09:19678319..19678343 (25 bp)
AATTCTCTGATAGTAGGTCTCCTTA
LOC_Os09g32968
Os.9411.1.S1_at--620--3371Chr09:19678290..19678314 (25 bp)
CACCAACCCAACTGTATTTCAATGC
LOC_Os09g32968
Os.9411.1.S1_at--1058--2231Chr09:19678251..19678275 (25 bp)
ACAATATCTGTTACATCCTGCTCAG
LOC_Os09g32968
Os.9411.1.S1_at--28--7011Chr09:19678181..19678205 (25 bp)
GTACTGTGCTGCAGTAACTTGCCGC
LOC_Os09g32968
Os.9411.1.S1_at--745--9171Chr09:19678162..19678186 (25 bp)
TGCCGCCTCATCAGATTCATTTCAG
LOC_Os09g32968
Os.9411.1.S1_at--1020--9311Chr09:19678112..19678136 (25 bp)
TATTAGGTCCTAAGTATTTCCACGG
LOC_Os09g32968
Target Sequence 
TTTCGTATTATGACCAGCATGCCAAAGATGAACATTTCAGCGCNTTGTTTGAGCAAATTGCAAAGTTGGATGAAGCCCTC
TACAACATTCAGTTTGAACAGCACTGGTTGGAGGCCCAAACAGACCGGCAAGCAATATTAAACGAGAACATGAGTAGGAG
GGCAGTTCACAAGGCATTCTTTGNATCAGCTGCTCTCATTGCAGCCAGTGTTGTGCAGGTCTACCTACTGCATCNCCTCT
TTGAGCGAAAGCTGGGAACATCNNAGGGTCTAATTCTCTGATAGTAGGTCTCCTTANACTCACCAACCCAACTGTATTTC
AATGCTGCAAAATGTGTTTACAATATCTGTTACATCCTGCTCAGATATTTAGCATTTTTGTTCAGAATTTTGTAATTCAG
TTATTTACAGTACTGTGCTGCAGTAACTTGCCGCCTCATCAGATTCATTTCAGCNCATTANNNNNANNNNNACATGTATA
TTAGGTCCTAAGTATTTCCACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9411.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis