Browse Element(s) Details


Os.57081.1.S1_at

Description gb:AK110881.1
DB_XREF= gi:32996090
TID=Os.57081.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57081 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-172-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-172-G09, full insert sequence.
FL= gb:AK110881.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3295211/11L-ascorbate oxidase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32944OsAffx.2442.1.S1_x_at1/119+19643053..19647823SBP domain containing protein
LOC_Os09g32948Os.2236.1.S1_at9/119+19652979..19659355Agamous-like MADS box protein AGL9 homolog, putative, expressed
LOC_Os09g32952Os.57081.1.S1_at11/119+19662398..19664857L-ascorbate oxidase precursor, putative, expressed
LOC_Os09g32956Os.10442.1.S2_at1/119+19666586..19667385hypothetical protein
LOC_Os09g32960Os.7773.1.S1_at11/119+19670842..19673054expressed protein
LOC_Os09g32964Os.11559.1.S1_at11/119+19674158..19676631Peroxidase 35 precursor, putative, expressed
LOC_Os09g32968Os.9411.1.S1_at11/119+19678026..19680933emp24/gp25L/p24 family protein, putative, expressed
LOC_Os09g32972OsAffx.26564.1.S1_at2/119+19681668..19682492hypothetical protein
LOC_Os09g32976Os.37882.1.S1_at11/119+19683255..1968546260S ribosomal protein L7a, putative, expressed
LOC_Os09g32980OsAffx.22608.3.S1_x_at4/119+19686876..19688776retrotransposon protein, putative, LINE subclass
LOC_Os09g32980OsAffx.22608.3.S1_at3/119+19686876..19688776retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
GO:0005507molecular_functioncopper ion binding
GO:0008447molecular_functionL-ascorbate oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57081.1.S1_at--421--3371Chr09:19664544..19664568 (25 bp)
CACCTGGAGGCCCACGTGTACATGG
LOC_Os09g32952
Os.57081.1.S1_at--765--8551Chr09:19664548..19664572 (25 bp)
TGGAGGCCCACGTGTACATGGGCAT
LOC_Os09g32952
Os.57081.1.S1_at--457--5051Chr09:19664641..19664665 (25 bp)
GCACCAAGGGCCATCACTACTAAAA
LOC_Os09g32952
Os.57081.1.S1_at--478--1091Chr09:19664647..19664671 (25 bp)
AGGGCCATCACTACTAAAAACTTGT
LOC_Os09g32952
Os.57081.1.S1_at--954--2511Chr09:19664699..19664723 (25 bp)
AACTTGTTGTTCTTATACTTCATGG
LOC_Os09g32952
Os.57081.1.S1_at--519--331Chr09:19664713..19664737 (25 bp)
ATACTTCATGGTGACGAACGTCCAA
LOC_Os09g32952
Os.57081.1.S1_at--855--5451Chr09:19664728..19664752 (25 bp)
GAACGTCCAACAGCTTAGTCATCAT
LOC_Os09g32952
Os.57081.1.S1_at--152--2491Chr09:19664736..19664760 (25 bp)
AACAGCTTAGTCATCATGTGTCAAA
LOC_Os09g32952
Os.57081.1.S1_at--174--8671Chr09:19664752..19664776 (25 bp)
TGTGTCAAAACATTACTATAAGGGT
LOC_Os09g32952
Os.57081.1.S1_at--152--8631Chr09:19664777..19664801 (25 bp)
TGGGATTTGGGAAGTTTGTTTTCAT
LOC_Os09g32952
Os.57081.1.S1_at--121--8751Chr09:19664808..19664832 (25 bp)
TGTAAACATAGTGACCACATTGGTC
LOC_Os09g32952
Target Sequence 
CACCTGGAGGCCCACGTGTACATGGGCATGGGCGTGGTGTTCGAGGAGGGCGTCGACGTGCTGCCGCGGCTGCCGGCGTC
CATCATGGGGTGCGGCCGCACCAAGGGCCATCACTACTAAAAACTTGTGTTATCCAAAAAAAAAAAAACTACTAAAAACT
TGTTGTTCTTATACTTCATGGTGACGAACGTCCAACAGCTTAGTCATCATGTGTCAAAACATTACTATAAGGGTTGGGAT
TTGGGAAGTTTGTTTTCATTAATTTTGTAAACATAGTGACCACATTGGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57081.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis