Browse Element(s) Details


Os.7773.1.S1_at

Description gb:AK067860.1
DB_XREF= gi:32977878
TID=Os.7773.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7773 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013124G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013124G10, full insert sequence.
FL= gb:AK067860.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3296011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32944OsAffx.2442.1.S1_x_at1/119+19643053..19647823SBP domain containing protein
LOC_Os09g32948Os.2236.1.S1_at9/119+19652979..19659355Agamous-like MADS box protein AGL9 homolog, putative, expressed
LOC_Os09g32952Os.57081.1.S1_at11/119+19662398..19664857L-ascorbate oxidase precursor, putative, expressed
LOC_Os09g32956Os.10442.1.S2_at1/119+19666586..19667385hypothetical protein
LOC_Os09g32960Os.7773.1.S1_at11/119+19670842..19673054expressed protein
LOC_Os09g32964Os.11559.1.S1_at11/119+19674158..19676631Peroxidase 35 precursor, putative, expressed
LOC_Os09g32968Os.9411.1.S1_at11/119+19678026..19680933emp24/gp25L/p24 family protein, putative, expressed
LOC_Os09g32972OsAffx.26564.1.S1_at2/119+19681668..19682492hypothetical protein
LOC_Os09g32976Os.37882.1.S1_at11/119+19683255..1968546260S ribosomal protein L7a, putative, expressed
LOC_Os09g32980OsAffx.22608.3.S1_x_at4/119+19686876..19688776retrotransposon protein, putative, LINE subclass
LOC_Os09g32980OsAffx.22608.3.S1_at3/119+19686876..19688776retrotransposon protein, putative, LINE subclass
LOC_Os09g32984NANA9+19691115..19691531Auxin responsive protein
LOC_Os09g32988Os.52095.2.S1_at9/119+19693025..19695333Pollen proteins Ole e I family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7773.1.S1_at--685--7291Chr09:19672415..19672439 (25 bp)
GTGCTTGTTCCTCACAAACGAACAG
LOC_Os09g32960
Os.7773.1.S1_at--360--371Chr09:19672492..19672516 (25 bp)
ATCAAGATCAGCTATTACAACCCAA
LOC_Os09g32960
Os.7773.1.S1_at--630--6511Chr09:19672531..19672555 (25 bp)
GATATCAGTGCAATTCCTTTCTTGG
LOC_Os09g32960
Os.7773.1.S1_at--783--4291Chr09:19672546..19672570 (25 bp)
CCTTTCTTGGTCCTACTGACTGTAA
LOC_Os09g32960
Os.7773.1.S1_at--958--6891Chr09:19672574..19672598 (25 bp)
GTATCATGCCTATATCACTATTATC
LOC_Os09g32960
Os.7773.1.S1_at--1099--6051Chr09:19672618..19672642 (25 bp)
GAGTTGTTGTCTTTATTGCATTCAT
LOC_Os09g32960
Os.7773.1.S1_at--605--10471Chr09:19672797..19672821 (25 bp)
TTACGTTGTTGCCATCCTATCTTTT
LOC_Os09g32960
Os.7773.1.S1_at--407--10151Chr09:19672814..19672838 (25 bp)
TATCTTTTCCTTCCCGGACAACATT
LOC_Os09g32960
Os.7773.1.S1_at--559--2511Chr09:19672833..19672857 (25 bp)
AACATTTTTACCATGTAACGCCGCA
LOC_Os09g32960
Os.7773.1.S1_at--270--9811Chr09:19672848..19672872 (25 bp)
TAACGCCGCAACAAGCTTAGATGGT
LOC_Os09g32960
Os.7773.1.S1_at--165--5211Chr09:19672980..19673004 (25 bp)
GAATTGGAGAGTTCTTTTCCTTCAA
LOC_Os09g32960
Target Sequence 
GTGCTTGTTCCTCACAAACGAACAGTATTCTACATCAATTTTCTGTGGTAAATTAATGCGGATGTATTAAGTTCACCATC
AAGATCAGCTATTACAACCCAAATAAGTTCAAATATGATATCAGTGCAATTCCTTTCTTGGTCCTACTGACTGTAAACAG
TATCATGCCTATATCACTATTATCATCACTATCATGCTTTTAAGAGTTGTTGTCTTTATTGCATTCATANCTNNNNCNNA
CNTNNNNGNNTNNNNNNNNNNNNNNNNNGNNNNNNNNNNCANGGTATATATTTTCCAAGCCTCCANTTCATGTCCTACAT
GTGAAGTTGAATGAGAAGTAGGTTCTCATGGAGGTGTATACAAGCAGAAGAGTTTNGGGCGGCATTACGTTGTTGCCATC
CTATCTTTTCCTTCCCGGACAACATTTTTACCATGTAACGCCGCAACAAGCTTAGATGGTTTTATATATTATAATTAGGA
TGGCAAGCTTTAACAGAAAACTTTGTACATATGGAAAAAGAACGGTTTGGTTTTATTATTTATTACATCTATCCTATAAT
TGTTTCAGAATTGGAGAGTTCTTTTCCTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7773.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis