Browse Element(s) Details


Os.52095.2.S1_at

Description gb:AK064705.1
DB_XREF= gi:32974723
TID=Os.52095.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52095 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013068N24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-118-A04, full insert sequence.
FL= gb:AK064705.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g329889/11Pollen proteins Ole e I family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32960Os.7773.1.S1_at11/119+19670842..19673054expressed protein
LOC_Os09g32964Os.11559.1.S1_at11/119+19674158..19676631Peroxidase 35 precursor, putative, expressed
LOC_Os09g32968Os.9411.1.S1_at11/119+19678026..19680933emp24/gp25L/p24 family protein, putative, expressed
LOC_Os09g32972OsAffx.26564.1.S1_at2/119+19681668..19682492hypothetical protein
LOC_Os09g32976Os.37882.1.S1_at11/119+19683255..1968546260S ribosomal protein L7a, putative, expressed
LOC_Os09g32980OsAffx.22608.3.S1_x_at4/119+19686876..19688776retrotransposon protein, putative, LINE subclass
LOC_Os09g32980OsAffx.22608.3.S1_at3/119+19686876..19688776retrotransposon protein, putative, LINE subclass
LOC_Os09g32984NANA9+19691115..19691531Auxin responsive protein
LOC_Os09g32988Os.52095.2.S1_at9/119+19693025..19695333Pollen proteins Ole e I family protein, expressed
LOC_Os09g33450Os.17295.1.S1_at11/119+19701631..19706208DHHC zinc finger domain containing protein, expressed
LOC_Os09g33460Os.49632.1.S1_a_at11/119+19710358..19712402Double-stranded RNA binding motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52095.2.S1_at--1064--9171Chr09:19693393..19693417 (25 bp)
TGCCGGACTGGCTGGTGCCATTCCT
LOC_Os09g32988
Os.52095.2.S1_at--1006--6731Chr09:19693359..19693383 (25 bp)
GTTCTTGCCATTCACGCTGTACCAG
LOC_Os09g32988
Os.52095.2.S1_at--459--10651Chr09:19693287..19693311 (25 bp)
TTCCCAAGAAGCATCACCATCTCAG
LOC_Os09g32988
Os.52095.2.S1_at--764--1731Chr09:19693272..19693296 (25 bp)
ACCATCTCAGCCTTAGACCTGAAAA
LOC_Os09g32988
Os.52095.2.S1_at--604--2391Chr09:19693235..19693259 (25 bp)
AAACTTGCCAAGATTAATCCTAGAT
LOC_Os09g32988
Os.52095.2.S1_at--178--9771Chr09:19693221..19693245 (25 bp)
TAATCCTAGATTCTTCATGTTTAGC
LOC_Os09g32988
Os.52095.2.S1_at--1077--8791Chr09:19693168..19693192 (25 bp)
TGTTGTAGGTGATGATTCTCCCTGC
LOC_Os09g32988
Os.52095.2.S1_at--601--6571Chr09:19693155..19693179 (25 bp)
GATTCTCCCTGCATCACACGTGTAG
LOC_Os09g32988
Os.52095.2.S1_at--486--9691NONE
TCACACGTGTAGCTGGAGCGAGTTC
NONE
Os.52095.2.S1_at--346--5891NONE
GAGCGAGTTCAGGAATTGCCACCGT
NONE
Os.52095.2.S1_at--874--10531Chr09:19693120..19693144 (25 bp)
TTCAGGAATTGCCACCGTGTTCATC
LOC_Os09g32988
Target Sequence 
TGCCGGACTGGCTGGTGCCATTCCTGCGGCCGCCGTTCTTGCCATTCACGCTGTACCAGCCGGCGCCGGCGGGCTCCGCG
CCGCCGCCGTTCTACCGCTTCCCGCCTTCCCAAGAAGCATCACCATCTCAGCCTTAGACCTGAAAAAGTACAAAAAAAAA
ACTTGCCAAGATTAATCCTAGATTCTTCATGTTTAGCAGCAAGAGAGGTTGTGTGATTGTGACATTGTTGTAGGTGATGA
TTCTCCCTGCATCACACGTGTAGCTGGAGCGAGTTCAGGAATTGCCACCGTGTTCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52095.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis