Browse Element(s) Details


OsAffx.29620.1.S1_at

Description tigr:9636.m04216
TID=OsAffx.29620.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4150010/11UBA/TS-N domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41470Os.17601.1.S1_at11/118+26059851..26063253expressed protein
LOC_Os08g41480Os.53588.1.S1_at11/118+26065378..26068696SAM domain family protein, expressed
LOC_Os08g41490OsAffx.29623.1.S1_at11/118+26070348..26075782hypothetical protein
LOC_Os08g41490OsAffx.29623.2.S1_s_at7/118+26070348..26075782hypothetical protein
LOC_Os08g41500OsAffx.29620.1.S1_at10/118+26081563..26086104UBA/TS-N domain containing protein, expressed
LOC_Os08g41510OsAffx.29621.1.S1_at11/118+26089944..26093295hypothetical protein
LOC_Os08g41510Os.10442.1.S2_at1/118+26089944..26093295hypothetical protein
LOC_Os08g41520NANA8+26098945..26099864Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g41530Os.49943.1.S1_at10/118+26100851..26105664Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os08g41540Os.49943.1.S1_at1/118+26107480..26111135Ubiquitin carboxyl-terminal hydrolase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29620.1.S1_at--502--8491Chr08:26085189..26085213 (25 bp)
TGGAAAACCCAGTAGCTTCAGTCCC
LOC_Os08g41500
OsAffx.29620.1.S1_at--669--9311NONE
TCCCAACCTTAACTCCAACGAAGAT
NONE
OsAffx.29620.1.S1_at--525--2431Chr08:26085309..26085333 (25 bp)
AAAACCTGTTGAACCTGCTGTGTCA
LOC_Os08g41500
OsAffx.29620.1.S1_at--632--1751Chr08:26085321..26085345 (25 bp)
ACCTGCTGTGTCACCAGAACAACTG
LOC_Os08g41500
OsAffx.29620.1.S1_at--257--5511Chr08:26085337..26085361 (25 bp)
GAACAACTGAGAGACTGCCTACGAA
LOC_Os08g41500
OsAffx.29620.1.S1_at--96--4031Chr08:26085948..26085972 (25 bp)
CGTAGAATTCCTGGAGCTGTGCGGA
LOC_Os08g41500
OsAffx.29620.1.S1_at--338--6571Chr08:26085971..26085995 (25 bp)
GATTCATGAAGCTCGCGATCAGCGG
LOC_Os08g41500
OsAffx.29620.1.S1_at--645--4631Chr08:26085985..26086009 (25 bp)
GCGATCAGCGGCTACCTGGTAATGC
LOC_Os08g41500
OsAffx.29620.1.S1_at--333--7671Chr08:26086013..26086037 (25 bp)
GGGATAATATCAACTTGGCACTTCT
LOC_Os08g41500
OsAffx.29620.1.S1_at--490--10871Chr08:26086027..26086051 (25 bp)
TTGGCACTTCTCAATGCTGCTGGAG
LOC_Os08g41500
OsAffx.29620.1.S1_at--186--3911Chr08:26086046..26086070 (25 bp)
CTGGAGTTGAGGTAGCATCTGCAAT
LOC_Os08g41500
Target Sequence 
TGGAAAACCCAGTAGCTTCAGTCCCAACCTTAACTCCAACGAAGATAAAACCTGTTGAACCTGCTGTGTCACCAGAACAA
CTGAGAGACTGCCTACGAAATCTGAAAAAGAATTACAAGGATGACACTACTAAAGTCACAAGAGCATTCCAAATACTGCT
GAAGATAATTGCCAACATAGTGAAGAACCCAGAAGAGGAGAAGTTCAGGAGGATTCGACTAAACAATCCTGTTTTCAAGG
AAAGAGTGGGCAATTTGCAAGGAGGCGTAGAATTCCTGGAGCTGTGCGGATTCATGAAGCTCGCGATCAGCGGCTACCTG
GTAATGCCGAGGGATAATATCAACTTGGCACTTCTCAATGCTGCTGGAGTTGAGGTAGCATCTGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29620.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis