Browse Element(s) Details


OsAffx.6103.1.S1_at

Description tigr:9636.m04204
TID=OsAffx.6103.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Glycosyl hydrolases family 17, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4141010/11Glycosyl hydrolases family 17 protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41360OsAffx.29618.1.S1_at11/118+25994119..25995087hypothetical protein
LOC_Os08g41370NANA8+25999728..26000306amino acid permease family protein, putative
LOC_Os08g41380Os.21219.1.S1_at9/118+26001192..26004468pentatricopeptide, putative, expressed
LOC_Os08g41390Os.10593.1.S1_at11/118+26005624..2601156570 kDa peptidylprolyl isomerase, putative, expressed
LOC_Os08g41400Os.48636.1.S1_at11/118+26010220..26015001expressed protein
LOC_Os08g41410OsAffx.6103.1.S1_at10/118+26017526..26020335Glycosyl hydrolases family 17 protein
LOC_Os08g41410Os.53586.1.S1_at1/118+26017526..26020335Glycosyl hydrolases family 17 protein
LOC_Os08g41420Os.51686.1.S2_at11/118+26021174..26025007expressed protein
LOC_Os08g41420Os.51686.1.S1_at11/118+26021174..26025007expressed protein
LOC_Os08g41420OsAffx.17457.1.S1_at11/118+26021174..26025007expressed protein
LOC_Os08g41430NANA8+26027029..26028746Leucine Rich Repeat family protein
LOC_Os08g41440Os.53946.1.S1_at11/118+26032225..26034179NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g41460Os.53186.1.S1_x_at11/118+26041184..26052277expressed protein
LOC_Os08g41460Os.13734.1.S1_s_at9/118+26041184..26052277expressed protein
LOC_Os08g41460OsAffx.17102.1.S1_at1/118+26041184..26052277expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6103.1.S1_at--997--8051Chr08:26019278..26019302 (25 bp)
GGAGCCGAGATACCGGTGTTCCTCT
LOC_Os08g41410
OsAffx.6103.1.S1_at--80--9531Chr08:26019196..26019220 (25 bp)
TCTACTACCCGAACGCGACGTGGGT
LOC_Os08g41410
OsAffx.6103.1.S1_at--66--1911Chr08:26019091..26019115 (25 bp)
ACGGGACTCCCGTGTGGTGCGTTCT
LOC_Os08g41410
OsAffx.6103.1.S1_at--721--4611Chr08:26018927..26018951 (25 bp)
GCGAGCTACGCGTTCAATGCGTATT
LOC_Os08g41410
OsAffx.6103.1.S1_at--142--3031Chr08:26018912..26018936 (25 bp)
AATGCGTATTGGCAGCTGTTCAGGA
LOC_Os08g41410
OsAffx.6103.1.S1_at--434--2691Chr08:26018887..26018911 (25 bp)
AAGCTGGTGGCACCTGCTACTTCAA
LOC_Os08g41410
OsAffx.6103.1.S1_at--323--9891Chr08:26018870..26018894 (25 bp)
TACTTCAACGGCCTTGCAGAGAAGA
LOC_Os08g41410
OsAffx.6103.1.S1_at--929--5951Chr08:26018855..26018876 (22 bp)
GAGAAGACCACCATAGATCCAACCT
LOC_Os08g41410
OsAffx.6103.1.S1_at--279--1291NONE
AGATCCAACCTTTGCACTCAGAAGT
NONE
OsAffx.6103.1.S1_at--835--10791Chr08:26017590..26017614 (25 bp)
TTGTTAACCTGCAATGTGATCGCGC
LOC_Os08g41410
OsAffx.6103.1.S1_at--995--531Chr08:26017572..26017596 (25 bp)
ATCGCGCAGTTCCTAGCTTGGTGGA
LOC_Os08g41410
Target Sequence 
GGAGCCGAGATACCGGTGTTCCTCTTCTCCCTCTACAACGAGAACCGCAAGCCGGGGCCGGGCACCGAGCGGCACTGGGG
TCTCTACTACCCGAACGCGACGTGGGTCTACGAGGTGGACCTCGCCGGGCGGCGGCCGGCGGCGTCGTACCCGCCGCTGG
CGCCCACGCCGCCGGCGCCGGACCAGGACGGGACTCCCGTGTGGTGCGTTCTTGCCGGCGGCGGCGGCGAGGCGGCGAAC
GAGACGGCGGTGGCGGCCGCCGTGGAGTACGCGTGCCGGCAGCGGAGCGGGACGTGCGCCGCCATCGAGGCCGGCGGCGA
GTGCAACCAGCCGGACACGCTCGCCGCGCACGCGAGCTACGCGTTCAATGCGTATTGGCAGCTGTTCAGGAAAGCTGGTG
GCACCTGCTACTTCAACGGCCTTGCAGAGAAGACCACCATAGATCCAACCTTTGCACTCAGAAGTAAACATGCAAAACCA
TTTGTTAACCTGCAATGTGATCGCGCAGTTCCTAGCTTGGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6103.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis