Browse Element(s) Details


Os.21219.1.S1_at

Description gb:AK063792.1
DB_XREF= gi:32973810
TID=Os.21219.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21219 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033025O03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-121-E10, full insert sequence.
FL= gb:AK063792.1 gb:AK073336.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g413809/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41340Os.11499.1.S1_at11/118+25987757..25990654Ras-related protein ARA-4, putative, expressed
LOC_Os08g41350OsAffx.28933.2.S1_x_at11/118+25991752..25992455hypothetical protein
LOC_Os08g41350OsAffx.28933.2.S1_at11/118+25991752..25992455hypothetical protein
LOC_Os08g41350OsAffx.28933.1.S1_x_at4/118+25991752..25992455hypothetical protein
LOC_Os08g41360OsAffx.29618.1.S1_at11/118+25994119..25995087hypothetical protein
LOC_Os08g41370NANA8+25999728..26000306amino acid permease family protein, putative
LOC_Os08g41380Os.21219.1.S1_at9/118+26001192..26004468pentatricopeptide, putative, expressed
LOC_Os08g41390Os.10593.1.S1_at11/118+26005624..2601156570 kDa peptidylprolyl isomerase, putative, expressed
LOC_Os08g41400Os.48636.1.S1_at11/118+26010220..26015001expressed protein
LOC_Os08g41410OsAffx.6103.1.S1_at10/118+26017526..26020335Glycosyl hydrolases family 17 protein
LOC_Os08g41410Os.53586.1.S1_at1/118+26017526..26020335Glycosyl hydrolases family 17 protein
LOC_Os08g41420Os.51686.1.S2_at11/118+26021174..26025007expressed protein
LOC_Os08g41420Os.51686.1.S1_at11/118+26021174..26025007expressed protein
LOC_Os08g41420OsAffx.17457.1.S1_at11/118+26021174..26025007expressed protein
LOC_Os08g41430NANA8+26027029..26028746Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21219.1.S1_at--20--2971Chr08:26002625..26002649 (25 bp)
AATGGCATGGCAGTGCTCCTGGATT
LOC_Os08g41380
Os.21219.1.S1_at--154--7931NONE
GGATTTCCAGGATCTCAGGTTGGCT
NONE
Os.21219.1.S1_at--1058--3471Chr08:26003923..26003947 (25 bp)
CAGGTTGGCTTGATGAGGACTCCAT
LOC_Os08g41380
Os.21219.1.S1_at--381--6191Chr08:26003937..26003961 (25 bp)
GAGGACTCCATAATTATCTGCAATT
LOC_Os08g41380
Os.21219.1.S1_at--65--9011Chr08:26003974..26003998 (25 bp)
TGAATGTTGCACTTTGCTCGTGCCG
LOC_Os08g41380
Os.21219.1.S1_at--338--4811Chr08:26003989..26004013 (25 bp)
GCTCGTGCCGTTTAGAATATTCTTA
LOC_Os08g41380
Os.21219.1.S1_at--439--851Chr08:26004064..26004088 (25 bp)
ATGGAATTGATCCTGCATCCAATAG
LOC_Os08g41380
Os.21219.1.S1_at--1079--3571Chr08:26004166..26004190 (25 bp)
CATTTGGTTGCTGTTGTCTTGTGCA
LOC_Os08g41380
Os.21219.1.S1_at--618--4591Chr08:26004262..26004286 (25 bp)
GCGAAGCATAATCCTTGTGAACTGT
LOC_Os08g41380
Os.21219.1.S1_at--225--10431Chr08:26004317..26004341 (25 bp)
TTAGGCATGCCTTCAAAACTGGGAA
LOC_Os08g41380
Os.21219.1.S1_at--799--611Chr08:26004454..26004478 (25 bp)
ATGCTGACGATCTTGTTTTGTTCCC
NONE
Target Sequence 
AATGGCATGGCAGTGCTCCTGGATTTCCAGGATCTCAGGTTGGCTTGATGAGGACTCCATAATTATCTGCAATTGATGGG
GATGTTTGAATGTTGCACTTTGCTCGTGCCGTTTAGAATATTCTTACATTTGGATGTTCTAGAGCTAAACATAATCACGA
GAATTGTGATGCTTCTATGGAATTGATCCTGCATCCAATAGGATAACACTGTAAATGAATCGATCAGACTGGCAGCAAGT
CATAGAAAAGGGTGAATTCCTTATTGTACCNAAATTTTCATTTGGTTGCTGTTGTCTTGTGCATTAATGTAATTTTCACA
ATCTTGTAAGGAAGTGAGGTGAGTGTGGACTATGAGGAATTGTTGATGTAAACAGCGAAGCATAATCCTTGTGAACTGTG
ATTATCATTGGTTGCACTAAATAGCAGATTTAGGCATGCCTTCAAAACTGGGAAGTAGAGTGGGCTAAAGTAGGCACTAG
GCAGTACTGGAATGTGGATACTGGATGTCTGGATGTTGAAGAAGGTGCAATCAGAACCCAATATGTAAATGATGCAGTGA
AGAGTGATGCTGACGATCTTGTTTTGTTCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21219.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis