Browse Element(s) Details


OsAffx.28933.2.S1_x_at

Description tigr:9636.m04197
TID=OsAffx.28933.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4135011/11hypothetical protein
LOC_Os05g284901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41320Os.10830.1.S1_at10/118+25970024..25972513Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g41329NANA8+25975379..25975743NA
LOC_Os08g41340Os.11499.1.S1_at11/118+25987757..25990654Ras-related protein ARA-4, putative, expressed
LOC_Os08g41350OsAffx.28933.2.S1_x_at11/118+25991752..25992455hypothetical protein
LOC_Os08g41350OsAffx.28933.2.S1_at11/118+25991752..25992455hypothetical protein
LOC_Os08g41350OsAffx.28933.1.S1_x_at4/118+25991752..25992455hypothetical protein
LOC_Os08g41360OsAffx.29618.1.S1_at11/118+25994119..25995087hypothetical protein
LOC_Os08g41370NANA8+25999728..26000306amino acid permease family protein, putative
LOC_Os08g41380Os.21219.1.S1_at9/118+26001192..26004468pentatricopeptide, putative, expressed
LOC_Os08g41390Os.10593.1.S1_at11/118+26005624..2601156570 kDa peptidylprolyl isomerase, putative, expressed
LOC_Os08g41400Os.48636.1.S1_at11/118+26010220..26015001expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009055molecular_functionelectron carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28933.2.S1_x_at--343--3874Chr08:25991844..25991868 (25 bp)
CTGTACCTCGGTAGTCGGCACACGC
LOC_Os08g41350
OsAffx.28933.2.S1_x_at--926--3732Chr08:25992111..25992135 (25 bp)
CTCAAGGACGGTGCTGGGCTGCTCA
LOC_Os08g41350
OsAffx.28933.2.S1_x_at--705--5171Chr08:25992154..25992178 (25 bp)
GCAAGATGGTCCACGTCGCGCCAGT
LOC_Os08g41350
OsAffx.28933.2.S1_x_at--869--9211Chr08:25992163..25992187 (25 bp)
TCCACGTCGCGCCAGTGGTGATGTC
LOC_Os08g41350
OsAffx.28933.2.S1_x_at--231--1911Chr08:25992166..25992190 (25 bp)
ACGTCGCGCCAGTGGTGATGTCGTT
LOC_Os08g41350
OsAffx.28933.2.S1_x_at--675--7231Chr08:25992168..25992192 (25 bp)
GTCGCGCCAGTGGTGATGTCGTTCC
LOC_Os08g41350
OsAffx.28933.2.S1_x_at--1149--4131Chr08:25992170..25992194 (25 bp)
CGCGCCAGTGGTGATGTCGTTCCCG
LOC_Os08g41350
OsAffx.28933.2.S1_x_at--1150--4151Chr08:25992172..25992196 (25 bp)
CGCCAGTGGTGATGTCGTTCCCGCA
LOC_Os08g41350
OsAffx.28933.2.S1_x_at--584--4411Chr08:25992173..25992197 (25 bp)
GCCAGTGGTGATGTCGTTCCCGCAC
LOC_Os08g41350
OsAffx.28933.2.S1_x_at--1052--1091Chr08:25992176..25992200 (25 bp)
AGTGGTGATGTCGTTCCCGCACCGG
LOC_Os08g41350
OsAffx.28933.2.S1_x_at--626--7491Chr08:25992177..25992201 (25 bp)
GTGGTGATGTCGTTCCCGCACCGGC
LOC_Os08g41350
Target Sequence 
CTGTACCTCGGTAGTCGGCACACGCCTTGGCCTCGTCGCCGCCATGGCCGACACCTTCCCGGAGCTCGGGGTGACGGCGA
GCGACTGCATCGAGATGATGTGGATCCAGTCCATGCTCTACTTCGCGTTCTACTGCACGGGGAAGCCATTGGAGATGCTC
CTGGACAGGGGCACTAGCAAGCCGGACAAGTACTTGAAGGCCAAGTCCGACTCCCTCCTCAAGGACGGTGCTGGGCTGCT
CATCCTCGACCCCTACGGCGGCAAGATGGTCCACGTCGCGCCAGTGGTGATGTCGTTCCCGCACCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28933.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis