Browse Element(s) Details


Os.11499.1.S1_at

Description gb:AK103220.1
DB_XREF= gi:32988429
TID=Os.11499.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11499 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033122O18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033122O18, full insert sequence.
FL= gb:AK103220.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4134011/11Ras-related protein ARA-4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41310OsAffx.29616.1.S1_at11/118+25962701..25963716hypothetical protein
LOC_Os08g41320Os.10830.1.S1_at10/118+25970024..25972513Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g41329NANA8+25975379..25975743NA
LOC_Os08g41340Os.11499.1.S1_at11/118+25987757..25990654Ras-related protein ARA-4, putative, expressed
LOC_Os08g41350OsAffx.28933.2.S1_x_at11/118+25991752..25992455hypothetical protein
LOC_Os08g41350OsAffx.28933.2.S1_at11/118+25991752..25992455hypothetical protein
LOC_Os08g41350OsAffx.28933.1.S1_x_at4/118+25991752..25992455hypothetical protein
LOC_Os08g41360OsAffx.29618.1.S1_at11/118+25994119..25995087hypothetical protein
LOC_Os08g41370NANA8+25999728..26000306amino acid permease family protein, putative
LOC_Os08g41380Os.21219.1.S1_at9/118+26001192..26004468pentatricopeptide, putative, expressed
LOC_Os08g41390Os.10593.1.S1_at11/118+26005624..2601156570 kDa peptidylprolyl isomerase, putative, expressed
LOC_Os08g41400Os.48636.1.S1_at11/118+26010220..26015001expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0048219biological_processinter-Golgi cisterna vesicle-mediated transport
GO:0005795cellular_componentGolgi stack
GO:0005798cellular_componentGolgi-associated vesicle
GO:0005802cellular_componentGolgi trans face
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11499.1.S1_at--211--10151Chr08:25988016..25988040 (25 bp)
TATCCCTCAATAGGGTAAGCATTGA
LOC_Os08g41340
Os.11499.1.S1_at--84--291Chr08:25988007..25988031 (25 bp)
ATAGGGTAAGCATTGAGGGTGATTC
LOC_Os08g41340
Os.11499.1.S1_at--818--6071Chr08:25987978..25988002 (25 bp)
GATGATCAGAAACAGTCAAACCGGT
LOC_Os08g41340
Os.11499.1.S1_at--1104--7051Chr08:25987964..25987988 (25 bp)
GTCAAACCGGTTTGGATGTTGCTAG
LOC_Os08g41340
Os.11499.1.S1_at--657--10211Chr08:25987925..25987949 (25 bp)
TATTATTATTGGATTCACTGTGATA
LOC_Os08g41340
Os.11499.1.S1_at--249--3331Chr08:25987910..25987934 (25 bp)
CACTGTGATATGAAGGTTTTTTGTT
LOC_Os08g41340
Os.11499.1.S1_at--139--10251Chr08:25987838..25987862 (25 bp)
TTTGGTTTGGTTACTCTGGTACACA
LOC_Os08g41340
Os.11499.1.S1_at--301--7891Chr08:25987830..25987854 (25 bp)
GGTTACTCTGGTACACACTGTGACA
LOC_Os08g41340
Os.11499.1.S1_at--948--7831Chr08:25987821..25987845 (25 bp)
GGTACACACTGTGACACTGAGATAC
LOC_Os08g41340
Os.11499.1.S1_at--409--291Chr08:25987765..25987789 (25 bp)
ATAGTTGAGAGGACTGCTTTGTGCT
LOC_Os08g41340
Os.11499.1.S1_at--450--1331Chr08:25987758..25987782 (25 bp)
AGAGGACTGCTTTGTGCTGTTACCT
LOC_Os08g41340
Target Sequence 
TATCCCTCAATAGGGTAAGCATTGAGGGTGATTCGAAGGATGATCAGAAACAGTCAAACCGGTTTGGATGTTGCTAGGGG
TTTTAGTACATTATTATTATTGGATTCACTGTGATATGAAGGTTTTTTGTTCATTAATATTATTATTATTATCTGTAAAC
TTGTAATCCAAATTGTTTTTTGGTTTGGTTACTCTGGTACACACTGTGACACTGAGATACAAAGTGAGAGAAGAATAGTT
GCTGGTAATGAATAGTTGAGAGGACTGCTTTGTGCTGTTACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11499.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis