Browse Element(s) Details


OsAffx.29616.1.S1_at

Description tigr:9636.m04193
TID=OsAffx.29616.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4131011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41280Os.5193.1.S1_at10/118+25939337..25941934auxin-responsive family protein, putative, expressed
LOC_Os08g41290OsAffx.17454.1.S1_s_at11/118+25953710..25954892auxin-responsive protein, putative, expressed
LOC_Os08g41300OsAffx.27508.111.S1_s_at10/118+25958067..2596009360S ribosomal protein L32, putative, expressed
LOC_Os08g41300Os.8861.1.S1_x_at1/118+25958067..2596009360S ribosomal protein L32, putative, expressed
LOC_Os08g41300Os.53621.1.S1_at1/118+25958067..2596009360S ribosomal protein L32, putative, expressed
LOC_Os08g41310OsAffx.29616.1.S1_at11/118+25962701..25963716hypothetical protein
LOC_Os08g41320Os.10830.1.S1_at10/118+25970024..25972513Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g41329NANA8+25975379..25975743NA
LOC_Os08g41340Os.11499.1.S1_at11/118+25987757..25990654Ras-related protein ARA-4, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29616.1.S1_at--602--9331Chr08:25963641..25963665 (25 bp)
TCGCCGTGCTGCGAGTACAGTGCCG
LOC_Os08g41310
OsAffx.29616.1.S1_at--434--9151Chr08:25963632..25963656 (25 bp)
TGCGAGTACAGTGCCGCGTGCGCCT
LOC_Os08g41310
OsAffx.29616.1.S1_at--646--4651Chr08:25963617..25963641 (25 bp)
GCGTGCGCCTTCAGGGCAACTGCGA
LOC_Os08g41310
OsAffx.29616.1.S1_at--499--4451Chr08:25963611..25963635 (25 bp)
GCCTTCAGGGCAACTGCGATGAACA
LOC_Os08g41310
OsAffx.29616.1.S1_at--285--8231Chr08:25963603..25963627 (25 bp)
GGCAACTGCGATGAACATGCAGAGA
LOC_Os08g41310
OsAffx.29616.1.S1_at--47--6091Chr08:25962783..25962806 (24 bp)
GAGTAGTAGTTGTAGTGCTTCATCC
LOC_Os08g41310
OsAffx.29616.1.S1_at--845--10051Chr08:25962780..25962804 (25 bp)
TAGTAGTTGTAGTGCTTCATCCTGA
LOC_Os08g41310
OsAffx.29616.1.S1_at--1039--7311Chr08:25962769..25962793 (25 bp)
GTGCTTCATCCTGAACTGTCAACTG
LOC_Os08g41310
OsAffx.29616.1.S1_at--582--3531Chr08:25962763..25962787 (25 bp)
CATCCTGAACTGTCAACTGAAGCTT
LOC_Os08g41310
OsAffx.29616.1.S1_at--205--5471Chr08:25962757..25962781 (25 bp)
GAACTGTCAACTGAAGCTTTGGAAC
LOC_Os08g41310
OsAffx.29616.1.S1_at--311--7091Chr08:25962752..25962776 (25 bp)
GTCAACTGAAGCTTTGGAACAAAGA
LOC_Os08g41310
Target Sequence 
TCGCCGTGCTGCGAGTACAGTGCCGCGTGCGCCTTCAGGGCAACTGCGATGAACATGCAGAGAGTAGTAGTTGTAGTGCT
TCATCCTGAACTGTCAACTGAAGCTTTGGAACAAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29616.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis