Browse Element(s) Details


OsAffx.27508.111.S1_s_at

Description gb:AK119175.1
DB_XREF= gi:37988798
TID=OsAffx.27508.111
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-037-F05, full insert sequence.
FL= gb:AK119175.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4130010/1160S ribosomal protein L32, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41270Os.24424.1.S1_at11/118+25929623..25936998Type II inositol-1,4,5-trisphosphate 5-phosphatase 12, putative, expressed
LOC_Os08g41280Os.5193.1.S1_at10/118+25939337..25941934auxin-responsive family protein, putative, expressed
LOC_Os08g41290OsAffx.17454.1.S1_s_at11/118+25953710..25954892auxin-responsive protein, putative, expressed
LOC_Os08g41300OsAffx.27508.111.S1_s_at10/118+25958067..2596009360S ribosomal protein L32, putative, expressed
LOC_Os08g41300Os.8861.1.S1_x_at1/118+25958067..2596009360S ribosomal protein L32, putative, expressed
LOC_Os08g41300Os.53621.1.S1_at1/118+25958067..2596009360S ribosomal protein L32, putative, expressed
LOC_Os08g41310OsAffx.29616.1.S1_at11/118+25962701..25963716hypothetical protein
LOC_Os08g41320Os.10830.1.S1_at10/118+25970024..25972513Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g41329NANA8+25975379..25975743NA

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27508.111.S1_s_at--415--10651Chr08:25958108..25958258 (25 bp)
TTCCCTCTCCGATCCGAAGAGATGG
LOC_Os08g41300
OsAffx.27508.111.S1_s_at--528--9271Chr08:25958115..25958265 (25 bp)
TCCGATCCGAAGAGATGGCGGTGCC
LOC_Os08g41300
OsAffx.27508.111.S1_s_at--157--9731Chr08:25958307..25958331 (25 bp)
TCAAGAGGCCCCATAGTGACCGCTA
LOC_Os08g41300
OsAffx.27508.111.S1_s_at--794--10071Chr08:25958320..25958344 (25 bp)
TAGTGACCGCTACCTATGCCTCAAG
LOC_Os08g41300
OsAffx.27508.111.S1_s_at--999--9971NONE
TACCTATGCCTCAAGCCAAGCTGGC
NONE
OsAffx.27508.111.S1_s_at--834--6051Chr08:25959727..25959751 (25 bp)
GAGATTGCCCACAACGTCTCTACGA
LOC_Os08g41300
OsAffx.27508.111.S1_s_at--295--9171Chr08:25959732..25959756 (25 bp)
TGCCCACAACGTCTCTACGAAGAAG
LOC_Os08g41300
OsAffx.27508.111.S1_s_at--192--4131Chr08:25959782..25959806 (25 bp)
CGCAGCTCGACATCGTGGTCACCAA
LOC_Os08g41300
OsAffx.27508.111.S1_s_at--701--3791Chr08:25959899..25959923 (25 bp)
CTCCAAGTATTCTCCTTTCAATCGA
LOC_Os08g41300
OsAffx.27508.111.S1_s_at--878--9491Chr08:25959909..25959933 (25 bp)
TCTCCTTTCAATCGATGTGGTACTG
LOC_Os08g41300
OsAffx.27508.111.S1_s_at--186--3691Chr08:25959944..25959968 (25 bp)
CTATTATGTCAACCTTTTTGCTACC
LOC_Os08g41300
Target Sequence 
TTCCCTCTCCGATCCGAAGAGATGGCGGTGCCGCTGCTGACGAAGAAGATCGTGAAGAAGAGGGTCAAGCAGTTCAAGAG
GCCCCATAGTGACCGCTACCTATGCCTCAAGCCAAGCTGGCGCAGGCCCAAGGGTATTGACTCCCGTGTCAGGAGAAAGT
TCAAGGGATGCACCTTGATGCCCAACATTGGTTACGGCTCAGACAAGAAGACCAGGCACTACCTCCCCAACAAGTTCAAG
AAGTTTGTGGTGCACAATGTCTCTGAGCTGGAGTTGCTCATGATGCACAACAGGACCTACTGTGCCGAGATTGCCCACAA
CGTCTCTACGAAGAAGCGCAAGGAGATCGTTGAGCGTGCTGCGCAGCTCGACATCGTGGTCACCAACAAGCTTGCAAGGC
TCCGTAGCCAGGAGGACGAGTAGGCTGTTTTATCAGTATAATGTTTTGGTCTGGTTTGATTGTAGGAAACTGTCGCGCCT
CCAAGTATTCTCCTTTCAATCGATGTGGTACTGTGAAAGATAACTATTATGTCAACCTTTTTGCTACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27508.111.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis