Browse Element(s) Details


Os.24424.1.S1_at

Description gb:AK100236.1
DB_XREF= gi:32985445
TID=Os.24424.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.24424 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023052D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023052D01, full insert sequence.
FL= gb:AK100236.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4127011/11Type II inositol-1,4,5-trisphosphate 5-phosphatase 12, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41230OsAffx.17452.1.S1_at11/118+25904090..25906978BTB/POZ domain containing protein
LOC_Os08g41240OsAffx.17453.1.S1_at11/118+25911424..25912473BTB/POZ domain containing protein
LOC_Os08g41240OsAffx.17453.1.S1_x_at11/118+25911424..25912473BTB/POZ domain containing protein
LOC_Os08g41250Os.12227.1.S1_at11/118+25913926..25916839Signal recognition particle receptor beta subunit, putative, expressed
LOC_Os08g41260NANA8+25920151..25923460retrotransposon protein, putative, unclassified
LOC_Os08g41270Os.24424.1.S1_at11/118+25929623..25936998Type II inositol-1,4,5-trisphosphate 5-phosphatase 12, putative, expressed
LOC_Os08g41280Os.5193.1.S1_at10/118+25939337..25941934auxin-responsive family protein, putative, expressed
LOC_Os08g41290OsAffx.17454.1.S1_s_at11/118+25953710..25954892auxin-responsive protein, putative, expressed
LOC_Os08g41300OsAffx.27508.111.S1_s_at10/118+25958067..2596009360S ribosomal protein L32, putative, expressed
LOC_Os08g41300Os.8861.1.S1_x_at1/118+25958067..2596009360S ribosomal protein L32, putative, expressed
LOC_Os08g41300Os.53621.1.S1_at1/118+25958067..2596009360S ribosomal protein L32, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004437molecular_functioninositol or phosphatidylinositol phosphatase activity
GO:0004445molecular_functioninositol-polyphosphate 5-phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24424.1.S1_at--290--9051Chr08:25936403..25936427 (25 bp)
TGCAGAACTGTTGGTGCGAAGTCAC
LOC_Os08g41270
Os.24424.1.S1_at--123--7111Chr08:25936423..25936447 (25 bp)
GTCACCAGAGATAAGGAGGCCGTTC
LOC_Os08g41270
Os.24424.1.S1_at--68--6231Chr08:25936438..25936462 (25 bp)
GAGGCCGTTCTTTTGGTCAATGTAA
LOC_Os08g41270
Os.24424.1.S1_at--8--2991Chr08:25936501..25936525 (25 bp)
AATGTCAGGCATTGCTGCTCAACGA
LOC_Os08g41270
Os.24424.1.S1_at--784--71Chr08:25936511..25936535 (25 bp)
ATTGCTGCTCAACGATTTCTGCATC
LOC_Os08g41270
Os.24424.1.S1_at--440--6731Chr08:25936579..25936603 (25 bp)
GTTCTATCGGGTGAAGCATCTACAA
LOC_Os08g41270
Os.24424.1.S1_at--1082--2571Chr08:25936637..25936661 (25 bp)
AACGTTCTGACTTTAAGCCATTCGG
LOC_Os08g41270
Os.24424.1.S1_at--895--2651Chr08:25936651..25936675 (25 bp)
AAGCCATTCGGCAGCTCAGAGGTGC
LOC_Os08g41270
Os.24424.1.S1_at--594--3431Chr08:25936667..25936691 (25 bp)
CAGAGGTGCATGATTTGTGCCCCTT
LOC_Os08g41270
Os.24424.1.S1_at--895--211Chr08:25936679..25936703 (25 bp)
ATTTGTGCCCCTTGTGAAACATGTA
LOC_Os08g41270
Os.24424.1.S1_at--595--1971Chr08:25936828..25936852 (25 bp)
ACTGACTTCTCACCATTCGTTGAGT
LOC_Os08g41270
Target Sequence 
TGCAGAACTGTTGGTGCGAAGTCACCAGAGATAAGGAGGCCGTTCTTTTGGTCAATGTAACAGGTAGCACCTCAACTGNA
ACCATTACACACAGGATCAATGTCAGGCATTGCTGCTCAACGATTTCTGCATCCCCGCCCATCAATCCACCGTCTATCAC
AACCCCATCCGTTGATGTTCTATCGGGTGAAGCATCTACAAGAAGTTCAAAGAAGAATCCGTNGAATTATTTGCAACGTT
CTGACTTTAAGCCATTCGGCAGCTCAGAGGTGCATGATTTGTGCCCCTTGTGAAACATGTAAAAATGAGTGTGTCTGTGT
GTTTTTGTCTGTTTGGTGTAGCAGTTCTGTATAGGAGTTGAGTCTTACNTTACTTACCAAAGGGAGAATTAAGGTGTCCC
ACTGTTAATTCTGTAGATATTCACCACTGACTTCTCACCATTCGTTGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24424.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis