Browse Element(s) Details


Os.10593.1.S1_at

Description gb:CB620654
DB_XREF= gi:29615642
DB_XREF=OSIIEa06A09.r
CLONE=OSIIEa06A09
TID=Os.10593.1
CNT=73
FEA=FLmRNA
TIER=Stack
STK=7
UG=Os.10593 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033121G16, full insert sequence
FL= gb:AK103172.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4139011/1170 kDa peptidylprolyl isomerase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41340Os.11499.1.S1_at11/118+25987757..25990654Ras-related protein ARA-4, putative, expressed
LOC_Os08g41350OsAffx.28933.2.S1_x_at11/118+25991752..25992455hypothetical protein
LOC_Os08g41350OsAffx.28933.2.S1_at11/118+25991752..25992455hypothetical protein
LOC_Os08g41350OsAffx.28933.1.S1_x_at4/118+25991752..25992455hypothetical protein
LOC_Os08g41360OsAffx.29618.1.S1_at11/118+25994119..25995087hypothetical protein
LOC_Os08g41370NANA8+25999728..26000306amino acid permease family protein, putative
LOC_Os08g41380Os.21219.1.S1_at9/118+26001192..26004468pentatricopeptide, putative, expressed
LOC_Os08g41390Os.10593.1.S1_at11/118+26005624..2601156570 kDa peptidylprolyl isomerase, putative, expressed
LOC_Os08g41400Os.48636.1.S1_at11/118+26010220..26015001expressed protein
LOC_Os08g41410OsAffx.6103.1.S1_at10/118+26017526..26020335Glycosyl hydrolases family 17 protein
LOC_Os08g41410Os.53586.1.S1_at1/118+26017526..26020335Glycosyl hydrolases family 17 protein
LOC_Os08g41420Os.51686.1.S2_at11/118+26021174..26025007expressed protein
LOC_Os08g41420Os.51686.1.S1_at11/118+26021174..26025007expressed protein
LOC_Os08g41420OsAffx.17457.1.S1_at11/118+26021174..26025007expressed protein
LOC_Os08g41430NANA8+26027029..26028746Leucine Rich Repeat family protein
LOC_Os08g41440Os.53946.1.S1_at11/118+26032225..26034179NAD dependent epimerase/dehydratase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009790biological_processembryonic development
GO:0009826biological_processunidimensional cell growth
GO:0030154biological_processcell differentiation
GO:0048364biological_processroot development
GO:0005634cellular_componentnucleus
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0005516molecular_functioncalmodulin binding
GO:0005528molecular_functionFK506 binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10593.1.S1_at--23--8991Chr08:26009262..26009286 (25 bp)
TGAAGGTTACCTGCAACTTGAACAA
LOC_Os08g41390
Os.10593.1.S1_at--199--2911Chr08:26009424..26009447 (24 bp)
AAGGTTCTGGAACTTGACAGCCAAA
LOC_Os08g41390
Os.10593.1.S1_at--64--3491Chr08:26009464..26009488 (25 bp)
CAGGAGGGCCCAAGCTTACATGCAA
LOC_Os08g41390
Os.10593.1.S1_at--358--2091Chr08:26009481..26009505 (25 bp)
ACATGCAACTTGCTGACCTAGAGTT
LOC_Os08g41390
Os.10593.1.S1_at--269--2791Chr08:26009734..26009758 (25 bp)
AAGATGACCAAGCAGCCAGCCGAAG
LOC_Os08g41390
Os.10593.1.S1_at--409--2911Chr08:26009889..26009913 (25 bp)
AAGGATCGGAACCTGTTACTGCTGC
LOC_Os08g41390
Os.10593.1.S1_at--946--6751Chr08:26009903..26009927 (25 bp)
GTTACTGCTGCCTAAGGACAGGACA
LOC_Os08g41390
Os.10593.1.S1_at--863--8131Chr08:26009918..26009942 (25 bp)
GGACAGGACACTCACGACATATCTT
LOC_Os08g41390
Os.10593.1.S1_at--801--8671Chr08:26009949..26009973 (25 bp)
TGTGTGCTGGCTAATCTTTGTTCTA
LOC_Os08g41390
Os.10593.1.S1_at--40--3071Chr08:26009961..26009985 (25 bp)
AATCTTTGTTCTAGTGGTGCACTGA
LOC_Os08g41390
Os.10593.1.S1_at--1161--6211Chr08:26009984..26010008 (25 bp)
GATGAGAAACGTTACTTCCCAAGTT
LOC_Os08g41390
Target Sequence 
TGAAGGTTACCTGCAACTTGAACAATGCTGCCTGCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACC
AAGGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAAGCTTACATGCAACTTGCTGACCTAGA
GTTAGCAGAGGTGGATATTAAGAAGGCACTTGAAATTGATCCTGATAACAGGGATGTGAAGTTGACATACAAGAACCTCA
AGGAAAAGGTCAAGGAGTACAACAAGAAGGATGCCAAATTCTACAGCAATATGTTCGCCAAGATGACCAAGCAGCCAGCC
GAAGACGGCAAAGCTGGATCTGGAGCTGAATCGAAGCAAGGATCGGAACCTGTTACTGCTGCCTAAGGACAGGACACTCA
CGACATATCTTAGATTTTGTGTGCTGGCTAATCTTTGTTCTAGTGGTGCACTGATGAGAAACGTTACTTCCCAAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10593.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis