Browse Element(s) Details


OsAffx.29618.1.S1_at

Description tigr:9636.m04198
TID=OsAffx.29618.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4136011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41320Os.10830.1.S1_at10/118+25970024..25972513Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g41329NANA8+25975379..25975743NA
LOC_Os08g41340Os.11499.1.S1_at11/118+25987757..25990654Ras-related protein ARA-4, putative, expressed
LOC_Os08g41350OsAffx.28933.2.S1_x_at11/118+25991752..25992455hypothetical protein
LOC_Os08g41350OsAffx.28933.2.S1_at11/118+25991752..25992455hypothetical protein
LOC_Os08g41350OsAffx.28933.1.S1_x_at4/118+25991752..25992455hypothetical protein
LOC_Os08g41360OsAffx.29618.1.S1_at11/118+25994119..25995087hypothetical protein
LOC_Os08g41370NANA8+25999728..26000306amino acid permease family protein, putative
LOC_Os08g41380Os.21219.1.S1_at9/118+26001192..26004468pentatricopeptide, putative, expressed
LOC_Os08g41390Os.10593.1.S1_at11/118+26005624..2601156570 kDa peptidylprolyl isomerase, putative, expressed
LOC_Os08g41400Os.48636.1.S1_at11/118+26010220..26015001expressed protein
LOC_Os08g41410OsAffx.6103.1.S1_at10/118+26017526..26020335Glycosyl hydrolases family 17 protein
LOC_Os08g41410Os.53586.1.S1_at1/118+26017526..26020335Glycosyl hydrolases family 17 protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29618.1.S1_at--348--9131Chr08:25995026..25995050 (25 bp)
TGCTGTACTTTCTTCTCCTGATCGT
LOC_Os08g41360
OsAffx.29618.1.S1_at--368--3812Chr03:2188783..2188802 (20 bp)
CTCCTGATCGTTGCCACTCTTGTGA
NONE
OsAffx.29618.1.S1_at--188--4411Chr08:25995003..25995024 (22 bp)
GCCACTCTTGTGATTACTGCAGAAG
LOC_Os08g41360
OsAffx.29618.1.S1_at--35--2831Chr08:25994856..25994880 (25 bp)
AAGTTGGTGTCGTTTTAGCTGCTGC
LOC_Os08g41360
OsAffx.29618.1.S1_at--43--7231Chr08:25994813..25994837 (25 bp)
GTCGACGACAGAAGAAGTACCGGTG
LOC_Os08g41360
OsAffx.29618.1.S1_at--169--8591Chr08:25994791..25994814 (24 bp)
TGGTAACAAGTGTACGTCTGCCCGC
LOC_Os08g41360
OsAffx.29618.1.S1_at--449--9171Chr08:25994330..25994796 (25 bp)
TGCCCGCCCAAACTGAGATATCATC
LOC_Os08g41360
OsAffx.29618.1.S1_at--846--1051Chr08:25994223..25994247 (25 bp)
AGGGCTCCGACGTGCACCTACAACG
LOC_Os08g41360
OsAffx.29618.1.S1_at--485--5071Chr08:25994210..25994234 (25 bp)
GCACCTACAACGAGTGCCGCGGCTG
LOC_Os08g41360
OsAffx.29618.1.S1_at--1098--5051Chr08:25994174..25994198 (25 bp)
GCAGCGTGCAGGAAGTCCCCGTCGA
LOC_Os08g41360
OsAffx.29618.1.S1_at--278--5811Chr08:25994151..25994175 (25 bp)
GACGCCGGCGATCCCATGAACAGCG
LOC_Os08g41360
Target Sequence 
TGCTGTACTTTCTTCTCCTGATCGTTGCCACTCTTGTGATTACTGCAGAAGTTGGTGTCGTTTTAGCTGCTGCTGCTCGG
GTACTCTCGCCGTCGACGACAGAAGAAGTACCGGTGGTAACAAGTGTACGTCTGCCCGCCCAAACTGAGATATCATCATC
ATCAGAAGGAGAAGCACGGGGAGGCGGGAGCAGCCGGGCGTCGGCGGCGGCGGCGGCGAGGAGGATGGCGATCGGGTCGA
GGGCTCCGACGTGCACCTACAACGAGTGCCGCGGCTGCCGCCGCCGGTGCAGCGTGCAGGAAGTCCCCGTCGACGCCGGC
GATCCCATGAACAGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29618.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis