Browse Element(s) Details


Os.12951.1.S1_at

Description gb:AU222554
DB_XREF= gi:15008166
DB_XREF=AU222554
CLONE=C61095
TID=Os.12951.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.12951 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0057L21.5), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4159011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41580OsAffx.27658.1.S1_at11/1110+22042900..22045269expressed protein
LOC_Os10g41580OsAffx.27658.2.S1_at2/1110+22042900..22045269expressed protein
LOC_Os10g41590Os.12951.1.S1_at11/1110+22059010..22066180Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g41590Os.48056.1.S1_s_at11/1110+22059010..22066180Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g41600NANA10+22070809..22072066hypothetical protein
LOC_Os10g41610NANA10+22073635..22077231retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g41620Os.46824.2.S1_at11/1110+22077753..22085166SNF2 family N-terminal domain containing protein
LOC_Os10g41620Os.46824.1.S1_x_at11/1110+22077753..22085166SNF2 family N-terminal domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0042306biological_processregulation of protein import into nucleus
GO:0005739cellular_componentmitochondrion
GO:0005856cellular_componentcytoskeleton
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12951.1.S1_at--792--2611Chr10:22065419..22065443 (25 bp)
AACCTCAGAAACTGAAGAGACTACT
LOC_Os10g41590
Os.12951.1.S1_at--364--9651Chr10:22065423..22065447 (25 bp)
TCAGAAACTGAAGAGACTACTATAC
LOC_Os10g41590
Os.12951.1.S1_at--1148--5531Chr10:22065426..22065450 (25 bp)
GAAACTGAAGAGACTACTATACAGA
LOC_Os10g41590
Os.12951.1.S1_at--87--171Chr10:22066105..22066129 (25 bp)
ATTTATCTGTTAATTGAGGTACCGG
LOC_Os10g41590
Os.12951.1.S1_at--22--10431Chr10:22066107..22066131 (25 bp)
TTATCTGTTAATTGAGGTACCGGCT
LOC_Os10g41590
Os.12951.1.S1_at--982--9211Chr10:22066108..22066132 (25 bp)
TATCTGTTAATTGAGGTACCGGCTA
LOC_Os10g41590
Os.12951.1.S1_at--997--391Chr10:22066109..22066133 (25 bp)
ATCTGTTAATTGAGGTACCGGCTAA
LOC_Os10g41590
Os.12951.1.S1_at--1100--9391Chr10:22066110..22066134 (25 bp)
TCTGTTAATTGAGGTACCGGCTAAA
LOC_Os10g41590
Os.12951.1.S1_at--555--3851Chr10:22066111..22066135 (25 bp)
CTGTTAATTGAGGTACCGGCTAAAG
LOC_Os10g41590
Os.12951.1.S1_at--985--8771Chr10:22066112..22066136 (25 bp)
TGTTAATTGAGGTACCGGCTAAAGT
LOC_Os10g41590
Os.12951.1.S1_at--811--10471Chr10:22066114..22066138 (25 bp)
TTAATTGAGGTACCGGCTAAAGTTG
LOC_Os10g41590
Target Sequence 
AACCTCAGAAACTGAAGAGACTACTATACAGAAGCTCCAAGATGAAATAAAAGAATGCAAGGCTATTCTCAAGTGTGGGG
TGTGCTTCGACCGGCCGAAAGAGGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGGAACCTT
GAGATCCGCCACCGCAAATGCCCAGGTTGTGGCACCCCCTTTGGACAGAGTGACGTTCGGGAGGTGAAGATNTGAAGCGT
CAGCAAAACAGCTTGAATGACTGACTTGGTAGCGAGCATGTAAATATATAGTAGTAGTGCTAGTTTCTGTTTTCTTGGAG
GACAGATATTAGATCGAATTGTCTTGGTGTGCCTCTGCCAAGACTGCCATGTAGAAACTATTATTATTATCACCTAAAAA
TAGTGCAATTGCGGGGATCTGATACTGACTGTGTCTGTTTTGCGTGTTGTATCATTAATTTATCTGTTAATTGAGGTACC
GGCTAAAGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12951.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis