Browse Element(s) Details


Os.48056.1.S1_s_at

Description gb:AK103864.1
DB_XREF= gi:32989073
TID=Os.48056.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.48056 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033149F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033149F01, full insert sequence.
FL= gb:AK103864.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4159011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41580OsAffx.27658.1.S1_at11/1110+22042900..22045269expressed protein
LOC_Os10g41580OsAffx.27658.2.S1_at2/1110+22042900..22045269expressed protein
LOC_Os10g41590Os.12951.1.S1_at11/1110+22059010..22066180Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g41590Os.48056.1.S1_s_at11/1110+22059010..22066180Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g41600NANA10+22070809..22072066hypothetical protein
LOC_Os10g41610NANA10+22073635..22077231retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g41620Os.46824.2.S1_at11/1110+22077753..22085166SNF2 family N-terminal domain containing protein
LOC_Os10g41620Os.46824.1.S1_x_at11/1110+22077753..22085166SNF2 family N-terminal domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0042306biological_processregulation of protein import into nucleus
GO:0005739cellular_componentmitochondrion
GO:0005856cellular_componentcytoskeleton
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48056.1.S1_s_at--1067--2911Chr10:22065170..22065194 (25 bp)
AAGGAGCTCAAGTGGCTTCGGTCCG
LOC_Os10g41590
Os.48056.1.S1_s_at--558--2871Chr10:22065179..22065203 (25 bp)
AAGTGGCTTCGGTCCGCTACTGGAT
LOC_Os10g41590
Os.48056.1.S1_s_at--515--1331Chr10:22065749..22065771 (23 bp)
AGAGGTCGTGATCACCAAATGCTTC
LOC_Os10g41590
Os.48056.1.S1_s_at--449--2291Chr10:22065763..22065787 (25 bp)
AAATGCTTCCACTTATTCTGCTCGC
LOC_Os10g41590
Os.48056.1.S1_s_at--514--9491Chr10:22065779..22065803 (25 bp)
TCTGCTCGCCATGTATCCAGAGGAA
LOC_Os10g41590
Os.48056.1.S1_s_at--258--1331Chr10:22065797..22065821 (25 bp)
AGAGGAACCTTGAGATCCGCCACCG
LOC_Os10g41590
Os.48056.1.S1_s_at--753--4151Chr10:22065843..22065867 (25 bp)
CCCCTTTGGACAGAGTGACGTTCGG
LOC_Os10g41590
Os.48056.1.S1_s_at--655--10731Chr10:22065900..22065924 (25 bp)
TTGAATGACTGACTTGGTAGCGAGC
LOC_Os10g41590
Os.48056.1.S1_s_at--186--4871Chr10:22065946..22065970 (25 bp)
GCTAGTTTCTGTTTTCTTGGAGGAC
LOC_Os10g41590
Os.48056.1.S1_s_at--40--6391Chr10:22065979..22066003 (25 bp)
GATCGAATTGTCTTGGTGTGCCTCT
LOC_Os10g41590
Os.48056.1.S1_s_at--65--4471Chr10:22065998..22066022 (25 bp)
GCCTCTGCCAAGACTGCCATGTAGA
LOC_Os10g41590
Target Sequence 
AAGGAGCTCAAGTGGCTTCGGTCCGCTACTGGATCTGCTGAGAAAGAATATGAGATAAATCAGAAAAAAATAGCTGAGCT
AAAAATGGAGCTAGAGCGTGAGAGAAATGAGAGGANAANAGCTTGAGGAAGNATACGAAGAGNTGAAAAACGAAGTCAGT
GAGCTAACCTCAGAAANCTGAAGAGANTACTATACAGAAGCTCCAAGATGAAATNAAAGAATGCAAGGCTATTCTCAAGT
GTGGGGTGTGCTTCGACCGGCCGAAAGAGGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
AACCTTGAGATCCGCCACCGCAAATGCCCAGGTTGTGGCACCCCCTTTGGACAGAGTGACGTTCGGGAGGTGAAGATNTG
AAGCGTCAGCAAAACAGCTTGAATGACTGACTTGGTAGCGAGCNTGTAAATATATAGTAGTAGTGCTAGTTTCTGTTTTC
TTGGAGGACAGATATTAGATCGAATTGTCTTGGTGTGCCTCTGCCAAGACTGCCATGTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48056.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis