Browse Element(s) Details


OsAffx.19417.1.S1_x_at

Description tigr:9639.m04373
TID=OsAffx.19417.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4700011/11Leucine Rich Repeat family protein
LOC_Os11g472107/11Leucine Rich Repeat family protein
LOC_Os06g160702/11Leucine Rich Repeat family protein, expressed
LOC_Os11g471801/11Leucine Rich Repeat family protein, expressed
LOC_Os11g471701/11Systemin receptor SR160 precursor, putative
LOC_Os11g469801/11Leucine Rich Repeat family protein
LOC_Os11g469601/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g46950OsAffx.19414.1.S1_at11/1111+27656847..27664849Protein kinase domain containing protein, expressed
LOC_Os11g46960OsAffx.19417.1.S1_at4/1111+27666274..27669689Leucine Rich Repeat family protein, expressed
LOC_Os11g46960OsAffx.19417.2.S1_x_at2/1111+27666274..27669689Leucine Rich Repeat family protein, expressed
LOC_Os11g46960OsAffx.19417.1.S1_x_at1/1111+27666274..27669689Leucine Rich Repeat family protein, expressed
LOC_Os11g46970OsAffx.31524.2.S1_x_at11/1111+27670498..27673888Leucine Rich Repeat family protein, expressed
LOC_Os11g46970OsAffx.31524.1.S1_at9/1111+27670498..27673888Leucine Rich Repeat family protein, expressed
LOC_Os11g46970OsAffx.31524.1.S1_x_at8/1111+27670498..27673888Leucine Rich Repeat family protein, expressed
LOC_Os11g46980OsAffx.19417.1.S1_at4/1111+27677599..27682626Leucine Rich Repeat family protein
LOC_Os11g46980OsAffx.19417.2.S1_x_at2/1111+27677599..27682626Leucine Rich Repeat family protein
LOC_Os11g46980OsAffx.19417.1.S1_x_at1/1111+27677599..27682626Leucine Rich Repeat family protein
LOC_Os11g46990NANA11+27683700..27684131retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g47000OsAffx.19417.1.S1_x_at11/1111+27688448..27692198Leucine Rich Repeat family protein
LOC_Os11g47000OsAffx.19417.1.S1_at11/1111+27688448..27692198Leucine Rich Repeat family protein
LOC_Os11g47000OsAffx.19417.2.S1_x_at8/1111+27688448..27692198Leucine Rich Repeat family protein
LOC_Os11g47000OsAffx.19417.2.S1_at4/1111+27688448..27692198Leucine Rich Repeat family protein
LOC_Os11g47000OsAffx.31524.1.S1_x_at1/1111+27688448..27692198Leucine Rich Repeat family protein
LOC_Os11g47000Os.46824.2.S1_at1/1111+27688448..27692198Leucine Rich Repeat family protein
LOC_Os11g47010NANA11+27692707..27693747retrotransposon protein, putative, unclassified
LOC_Os11g47019OsAffx.31526.1.S1_at11/1111+27694479..27695027hypothetical protein
LOC_Os11g47030OsAffx.19418.1.S1_at11/1111+27697364..27700795Leucine Rich Repeat family protein
LOC_Os11g47040NANA11+27708780..27709285expressed protein
LOC_Os11g47050Os.10827.1.S1_x_at3/1111+27713071..27714945transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47050Os.46055.2.S1_x_at2/1111+27713071..27714945transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47060OsAffx.7437.1.S1_at11/1111+27715235..27715606expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0007172biological_processsignal complex formation
GO:0009556biological_processmicrosporogenesis
GO:0009934biological_processregulation of meristem organization
GO:0010234biological_processtapetal cell fate specification
GO:0030154biological_processcell differentiation
GO:0016020cellular_componentmembrane
GO:0016021cellular_componentintegral to membrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004702molecular_functionreceptor signaling protein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19417.1.S1_x_at--890--10432Chr11:27843606..27843630 (25 bp)
TTAGAAGCACTCCTGCACTCAGAAC
LOC_Os11g47210
OsAffx.19417.1.S1_x_at--1133--1473Chr11:27843637..27843661 (25 bp)
AGCAATTAGGCTTTCTCGAGAGGTT
LOC_Os11g47210
OsAffx.19417.1.S1_x_at--633--10113Chr11:27843770..27843794 (25 bp)
TATGACGGCACATGTGGCAGACTTT
LOC_Os11g47210
OsAffx.19417.1.S1_x_at--808--672Chr11:27843820..27843844 (25 bp)
ATGACAACTCCATGATCTCAGCTAG
LOC_Os11g47210
OsAffx.19417.1.S1_x_at--821--7835Chr11:27669185..27669379 (25 bp)
GGTACATGGCACCAGTGTTCACTGC
LOC_Os11g46960
OsAffx.19417.1.S1_x_at--109--5372Chr11:27821010..27821034 (25 bp)
GAAGAGACCCACAGATGCTATGTTT
LOC_Os11g47180
OsAffx.19417.1.S1_x_at--699--5012Chr11:27844106..27844130 (25 bp)
GCAGTGGGTTCAACAGGCGTTTCCT
LOC_Os11g47210
OsAffx.19417.1.S1_x_at--113--6852Chr11:27844124..27844148 (25 bp)
GTTTCCTGCAGAGCTTGTCCATGTG
LOC_Os11g47210
OsAffx.19417.1.S1_x_at--703--4331Chr11:27691789..27691813 (25 bp)
CCATGTGGTGGACTGCAAACTTCTA
LOC_Os11g47000
OsAffx.19417.1.S1_x_at--732--2391Chr11:27691805..27691829 (25 bp)
AAACTTCTACAGGATGGCTCTTCTT
LOC_Os11g47000
OsAffx.19417.1.S1_x_at--608--7051Chr11:27691839..27691863 (25 bp)
GTAACATGCATGACTTCCTTGTGCC
LOC_Os11g47000
Target Sequence 
TTAGAAGCACTCCTGCACTCAGAACAAGGGAAGCAATTAGGCTTTCTCGAGAGGTTGGATATTATGCTAGATGTGTCAAT
GGCAATGGAATACCTGCATCATGAGCACTATGAGGTGGTCTTACACTGCGATTTGAAGCCTAGCAACGTACTATTTGACG
ATGATATGACGGCACATGTGGCAGACTTTGGTATTGCAAGGTTGTTGTTAGGTGATGACAACTCCATGATCTCAGCTAGC
ATGCCAGGAACAGTTGGGTACATGGCACCAGTGTTCACTGCGAAGAGACCCACAGATGCTATGTTTGTGGGAGAACTGAA
CATCAGGCAGTGGGTTCAACAGGCGTTTCCTGCAGAGCTTGTCCATGTGGTGGACTGCAAACTTCTACAGGATGGCTCTT
CTTCTTCTTCAAGTAACATGCATGACTTCCTTGTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19417.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis