Browse Element(s) Details


OsAffx.19418.1.S1_at

Description tigr:9639.m04403
TID=OsAffx.19418.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4730011/11Leucine Rich Repeat family protein
LOC_Os11g4703011/11Leucine Rich Repeat family protein
LOC_Os11g472407/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47260Os.46012.2.S1_x_at11/1111+27863257..27865566retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g47260Os.46012.3.S1_x_at9/1111+27863257..27865566retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g47260Os.27088.1.A1_x_at5/1111+27863257..27865566retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g47260Os.54691.1.S1_x_at1/1111+27863257..27865566retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g47269NANA11+27870072..27870466NA
LOC_Os11g47278OsAffx.31525.1.S1_at11/1111+27871699..27872374hypothetical protein
LOC_Os11g47290Os.51998.1.S1_at9/1111+27872882..27880052Leucine Rich Repeat family protein
LOC_Os11g47300OsAffx.19418.1.S1_at11/1111+27885956..27889389Leucine Rich Repeat family protein
LOC_Os11g47310Os.49804.1.S1_at10/1111+27892823..27896499Protein kinase domain containing protein, expressed
LOC_Os11g47320Os.11506.1.S1_at11/1111+27903697..27911397expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0007172biological_processsignal complex formation
GO:0009934biological_processregulation of meristem organization
GO:0030154biological_processcell differentiation
GO:0016020cellular_componentmembrane
GO:0016021cellular_componentintegral to membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004702molecular_functionreceptor signaling protein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19418.1.S1_at--409--2973Chr11:27888688..27888712 (25 bp)
AATGGAGCACCTTCACTATCATCAT
LOC_Os11g47300
OsAffx.19418.1.S1_at--205--8533Chr11:27888690..27888714 (25 bp)
TGGAGCACCTTCACTATCATCATTC
LOC_Os11g47300
OsAffx.19418.1.S1_at--1128--3652Chr11:27888698..27888722 (25 bp)
CTTCACTATCATCATTCTGAGGTTG
LOC_Os11g47300
OsAffx.19418.1.S1_at--1049--3552Chr11:27888707..27888731 (25 bp)
CATCATTCTGAGGTTGTTTTGCACT
LOC_Os11g47300
OsAffx.19418.1.S1_at--256--10612Chr11:27888712..27888736 (25 bp)
TTCTGAGGTTGTTTTGCACTGTGAC
LOC_Os11g47300
OsAffx.19418.1.S1_at--938--7913Chr11:27888718..27888742 (25 bp)
GGTTGTTTTGCACTGTGACCTCAAG
LOC_Os11g47300
OsAffx.19418.1.S1_at--63--10753Chr11:27888725..27888749 (25 bp)
TTGCACTGTGACCTCAAGCCTAGCA
LOC_Os11g47300
OsAffx.19418.1.S1_at--715--772Chr11:27888750..27888774 (25 bp)
ATGTGTTGTTCGATGAGGAGATGAC
LOC_Os11g47300
OsAffx.19418.1.S1_at--1020--8953Chr11:27888820..27888844 (25 bp)
TGACAACTCTGCAGTTTCAGCCAGC
LOC_Os11g47300
OsAffx.19418.1.S1_at--200--2553Chr11:27888824..27888848 (25 bp)
AACTCTGCAGTTTCAGCCAGCATGC
LOC_Os11g47300
OsAffx.19418.1.S1_at--582--4333Chr11:27889082..27889106 (25 bp)
CCATGTTTGTTGGTGACATGAGCCT
LOC_Os11g47300
Target Sequence 
AATGGAGCACCTTCACTATCATCATTCTGAGGTTGTTTTGCACTGTGACCTCAAGCCTAGCAATGTGTTGTTCGATGAGG
AGATGACGGCGCATNTGGCAGACTTTGGCATTGCAAAATTACTNTTAGGNGATGACAACTCTGCAGTTTCAGCCAGCATG
CNAGGGACANTAGGATACATGGCTCCAGANTATGNATNNATGGGAAAAGCATCACGNAAGAGCGATNTNTTCAGNTATGG
GATCATGNTGCTCGAAGTCTTNACNNGGAAGAGGCCTACNGATNCCATGTTTGTTGGTGACATGAGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19418.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis