Browse Element(s) Details


Os.51998.1.S1_at

Description gb:AK064501.1
DB_XREF= gi:32974519
TID=Os.51998.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51998 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-111-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-D05, full insert sequence.
FL= gb:AK064501.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g472909/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47229OsAffx.31526.1.S1_at11/1111+27847465..27848013hypothetical protein
LOC_Os11g47240OsAffx.19418.1.S1_at7/1111+27849300..27852726Leucine Rich Repeat family protein
LOC_Os11g47250Os.40855.2.S1_x_at10/1111+27854032..27859560hypothetical protein
LOC_Os11g47250Os.40855.5.S1_x_at6/1111+27854032..27859560hypothetical protein
LOC_Os11g47250Os.40855.4.S1_x_at4/1111+27854032..27859560hypothetical protein
LOC_Os11g47250Os.40360.1.S1_x_at1/1111+27854032..27859560hypothetical protein
LOC_Os11g47250Os.40855.4.S1_at1/1111+27854032..27859560hypothetical protein
LOC_Os11g47260Os.46012.2.S1_x_at11/1111+27863257..27865566retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g47260Os.46012.3.S1_x_at9/1111+27863257..27865566retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g47260Os.27088.1.A1_x_at5/1111+27863257..27865566retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g47260Os.54691.1.S1_x_at1/1111+27863257..27865566retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g47269NANA11+27870072..27870466NA
LOC_Os11g47278OsAffx.31525.1.S1_at11/1111+27871699..27872374hypothetical protein
LOC_Os11g47290Os.51998.1.S1_at9/1111+27872882..27880052Leucine Rich Repeat family protein
LOC_Os11g47300OsAffx.19418.1.S1_at11/1111+27885956..27889389Leucine Rich Repeat family protein
LOC_Os11g47310Os.49804.1.S1_at10/1111+27892823..27896499Protein kinase domain containing protein, expressed
LOC_Os11g47320Os.11506.1.S1_at11/1111+27903697..27911397expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51998.1.S1_at--498--7013Chr11:27838387..27838411 (25 bp)
GTACTTGCTCTAAGATAACAGTCCT
NONE
Os.51998.1.S1_at--227--6473Chr11:27838400..27838424 (25 bp)
GATAACAGTCCTACCAATTTAAATA
NONE
Os.51998.1.S1_at--842--5613Chr12:26916818..26916842 (25 bp)
GACAAAGTCACATGGTGGCCTACAA
NONE
Os.51998.1.S1_at--1003--2093Chr12:26916827..26916851 (25 bp)
ACATGGTGGCCTACAAGAGTTGGTA
NONE
Os.51998.1.S1_at--238--2374Chr11:27838558..27838582 (25 bp)
AAACCTACAGCTGCTAAAGTGTATG
NONE
Os.51998.1.S1_at--207--2314Chr11:27838573..27838597 (25 bp)
AAAGTGTATGCGTAGATCGTCTATA
NONE
Os.51998.1.S1_at--588--10414Chr12:26916983..26917007 (25 bp)
TTATTTACAACACCAGATCACTTCT
NONE
Os.51998.1.S1_at--291--1255Chr12:26916997..26917021 (25 bp)
AGATCACTTCTATTGTAAATTCCTA
NONE
Os.51998.1.S1_at--486--10795Chr12:26917009..26917033 (25 bp)
TTGTAAATTCCTAGCGTTTGCGCAT
NONE
Os.51998.1.S1_at--339--6854Chr12:26917024..26917048 (25 bp)
GTTTGCGCATTCACACTCAGATTAC
NONE
Os.51998.1.S1_at--475--6535Chr11:27838669..27838693 (25 bp)
GATTACTCTCTATGAAAAAACTGAT
NONE
Target Sequence 
GTACTTGCTCTAAGATAACAGTCCTACCAATTTAAATAAAAATTAATGATGAGATTAGACAAAGTCACATGGTGGCCTAC
AAGAGTTGGTAGAAATGGCACATAAGATAAAATATGATATTGTAGTAAAAATATAGCTAATATAGCTCTGGAATTGGTGA
TTTAATTAAAAAAACCTACAGCTGCTAAAGTGTATGCGTAGATCGTCTATAAAAATAATTGTTTATTTACAACACCAGAT
CACTTCTATTGTAAATTCCTAGCGTTTGCGCATTCACACTCAGATTACTCTCTATGAAAAAACTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51998.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis