Browse Element(s) Details


Os.11506.1.S1_at

Description gb:AK101888.1
DB_XREF= gi:32987097
TID=Os.11506.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11506 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033070M12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033070M12, full insert sequence.
FL= gb:AK101888.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4732011/11expressed protein
LOC_Os11g471304/11Importin-beta N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47290Os.51998.1.S1_at9/1111+27872882..27880052Leucine Rich Repeat family protein
LOC_Os11g47300OsAffx.19418.1.S1_at11/1111+27885956..27889389Leucine Rich Repeat family protein
LOC_Os11g47310Os.49804.1.S1_at10/1111+27892823..27896499Protein kinase domain containing protein, expressed
LOC_Os11g47320Os.11506.1.S1_at11/1111+27903697..27911397expressed protein
LOC_Os11g47330Os.8026.1.S1_at11/1111+27916046..27919616ATP-citrate synthase, putative, expressed
LOC_Os11g47339NANA11+27920797..27921526NA
LOC_Os11g47350OsAffx.7440.1.S1_at11/1111+27925261..27928087Glycosyl hydrolase family 3 C terminal domain containing protein
LOC_Os11g47360NANA11+27932743..27935485retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0000059biological_processprotein import into nucleus, docking
GO:0005634cellular_componentnucleus
GO:0005643cellular_componentnuclear pore
GO:0005737cellular_componentcytoplasm
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11506.1.S1_at--142--10572Chr11:27788708..27788732 (25 bp)
TTCTTCAAAGATATGCAGCGGCTGC
LOC_Os11g47130
Os.11506.1.S1_at--1052--1611Chr11:27904195..27904219 (25 bp)
AGCGGCTGCCGGTGGTGAATCAATT
LOC_Os11g47320
Os.11506.1.S1_at--444--2752Chr11:27788786..27788904 (25 bp)
AAGACATTGAATTGGGTTCCCTGGA
LOC_Os11g47130
Os.11506.1.S1_at--536--9871Chr11:27904003..27904027 (25 bp)
TACAGCAGGTGGTTCTTTCGATGAT
LOC_Os11g47320
Os.11506.1.S1_at--79--5352Chr11:27788941..27788965 (25 bp)
GAAGATTCGTCCTGATCTCATTCGC
LOC_Os11g47130
Os.11506.1.S1_at--1103--4812Chr11:27788966..27788990 (25 bp)
GCTCAAACATTTCCGGATGGCCTAA
LOC_Os11g47130
Os.11506.1.S1_at--310--2151Chr11:27903894..27903918 (25 bp)
ACAGCTGTTCCATGTTCATCGGCAA
LOC_Os11g47320
Os.11506.1.S1_at--865--5151Chr11:27903873..27903897 (25 bp)
GCAAGCCTAGGCGATACCACAATAG
LOC_Os11g47320
Os.11506.1.S1_at--381--7472Chr11:27789075..27789099 (25 bp)
GTGTGCAGCCTTGTTATTTATTGTT
NONE
Os.11506.1.S1_at--1043--5271Chr11:27903769..27903793 (25 bp)
GAATGGTGGGCCGATTATTGTTGAT
LOC_Os11g47320
Os.11506.1.S1_at--112--7971Chr11:27903719..27903743 (25 bp)
GGATCGGACTAATCTGCCGGACATG
LOC_Os11g47320
Target Sequence 
TTCTTCAAAGATATGCAGCGGCTGCCGGTGGTGAATCAATTGAAATTGTTGAGGACGGTGACATTGATGATGAAACCCAA
GACATTGAATTGGGTTCCCTGGATGAAATGGATGTACAGCAGGTGGTTCTTTCGATGATGAAGATTCGTCCTGATCTCAT
TCGCGCTCAAACATTTCCGGATGGCCTAATGGAGAGAATGGCAGAAACGTTTCCTGAATATGAACAGCTGTTCCATGTTC
ATCGGCAAGCCTAGGCGATACCACAATAGACTNGTGTGCAGCCTTGTTATTTATTGTTTCTAGTTTCTTTTTTTTTTAAA
CTTGTCCGTGTGTTTATATATTTGTATGGAATGGTGGGCCGATTATTGTTGATGGTTGTGGCGATTATTTTGTNNTTTGG
ATCGGACTAATCTGCCGGACATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11506.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis