Browse Element(s) Details


Os.8026.1.S1_at

Description gb:AK069911.1
DB_XREF= gi:32979935
TID=Os.8026.1
CNT=22
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.8026 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023038A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023038A05, full insert sequence.
FL= gb:AK069911.1 gb:AK061978.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4733011/11ATP-citrate synthase, putative, expressed
LOC_Os11g471207/11ATP-citrate synthase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47310Os.49804.1.S1_at10/1111+27892823..27896499Protein kinase domain containing protein, expressed
LOC_Os11g47320Os.11506.1.S1_at11/1111+27903697..27911397expressed protein
LOC_Os11g47330Os.8026.1.S1_at11/1111+27916046..27919616ATP-citrate synthase, putative, expressed
LOC_Os11g47339NANA11+27920797..27921526NA
LOC_Os11g47350OsAffx.7440.1.S1_at11/1111+27925261..27928087Glycosyl hydrolase family 3 C terminal domain containing protein
LOC_Os11g47360NANA11+27932743..27935485retrotransposon protein, putative, unclassified
LOC_Os11g47370Os.18443.1.S1_at7/1111+27938905..27941284expressed protein
LOC_Os11g47379NANA11+27942471..27943166NA

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Gene Ontology Classification
GO idTypeName
GO:0006085biological_processacetyl-CoA biosynthesis
GO:0006633biological_processfatty acid biosynthesis
GO:0007568biological_processaging
GO:0009911biological_processpositive regulation of flower development
GO:0010025biological_processwax biosynthesis
GO:0015995biological_processchlorophyll biosynthesis
GO:0016117biological_processcarotenoid biosynthesis
GO:0019252biological_processstarch biosynthesis
GO:0043481biological_processanthocyanin accumulation in tissues in response to UV light
GO:0045793biological_processpositive regulation of cell size
GO:0045995biological_processregulation of embryonic development
GO:0048366biological_processleaf development
GO:0005829cellular_componentcytosol
GO:0009346cellular_componentcitrate lyase complex
GO:0008815molecular_functioncitrate (pro-3S)-lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8026.1.S1_at--338--652Chr11:27918642..27918666 (25 bp)
ATGCAGAGTATAGCGGTGCTCCCAA
LOC_Os11g47330
Os.8026.1.S1_at--1150--7012Chr11:27918698..27918805 (25 bp)
GTACTTGATTGTGCGACTGCTGATC
LOC_Os11g47330
Os.8026.1.S1_at--443--9932Chr11:27918843..27918867 (25 bp)
TATAGCTAACTTCACCGACGTCGGG
LOC_Os11g47330
Os.8026.1.S1_at--807--9992Chr11:27918876..27918900 (25 bp)
TAGCGGCATCATTCGGGCCTTAAGA
LOC_Os11g47330
Os.8026.1.S1_at--889--2912Chr11:27919044..27919068 (25 bp)
AAGGATGCACATCTATGTCCGACGT
LOC_Os11g47330
Os.8026.1.S1_at--609--772Chr11:27919058..27919082 (25 bp)
ATGTCCGACGTGGTGGTCCAAATTA
LOC_Os11g47330
Os.8026.1.S1_at--1141--2372Chr11:27919085..27919109 (25 bp)
AAACTGGGCTGGCTAAAATGCGCAA
LOC_Os11g47330
Os.8026.1.S1_at--86--9012Chr11:27919373..27919397 (25 bp)
TGAATGCGTTATGGCCGCAGCATAA
LOC_Os11g47330
Os.8026.1.S1_at--877--9012Chr11:27919405..27919429 (25 bp)
TGCAAGTTCTGGGATCTGCAGGCAA
LOC_Os11g47330
Os.8026.1.S1_at--530--1192Chr11:27919481..27919505 (25 bp)
AGTAGTTCTCTGCAGATGGCTGATT
LOC_Os11g47330
Os.8026.1.S1_at--466--9872Chr11:27919557..27919581 (25 bp)
TACTGAAACTACTACTGCGATGCAA
LOC_Os11g47330
Target Sequence 
ATGCAGAGTATAGCGGTGCTCCCAATGAGGAGGAGGTTCTGCAGTATGCTAGAGTAGTACTTGATTGTGCGACTGCTGAT
CCTGATGGCCGCAAGAGAGCTCTTCTCATTGGAGGGGGTATAGCTAACTTCACCGACGTCGGGGCCACATTTAGCGGCAT
CATTCGGGCCTTAAGAGAGAAGGAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGTCCAAATT
ACCAAACTGGGCTGGCTAAAATGCGCAAGCTTGGCGCAGAACTCGGNGTCCCGATTGAGGTGTATGGGCCAGAAGCGACG
ATGACTGGAATCTGCAAGCAAGCAATTGAATGCGTTATGGCCGCAGCATAAATGAAGATGCAAGTTCTGGGATCTGCAGG
CAAGATGCTGAATGCGTGATGGGTGCGACATGGATGAGAGTGTGGTGTAGTTGCAGTAGTTCTCTGCAGATGGCTGATTT
GTTTCTTGATACATGTTATACTTGGACGAGATCTGGATAGGTTATTGATGTACTGAAACTACTACTGCGATGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8026.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis