Browse Element(s) Details


OsAffx.7440.1.S1_at

Description tigr:9639.m04410
TID=OsAffx.7440.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Glycosyl hydrolase family 3 N terminal domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4735011/11Glycosyl hydrolase family 3 C terminal domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47320Os.11506.1.S1_at11/1111+27903697..27911397expressed protein
LOC_Os11g47330Os.8026.1.S1_at11/1111+27916046..27919616ATP-citrate synthase, putative, expressed
LOC_Os11g47339NANA11+27920797..27921526NA
LOC_Os11g47350OsAffx.7440.1.S1_at11/1111+27925261..27928087Glycosyl hydrolase family 3 C terminal domain containing protein
LOC_Os11g47360NANA11+27932743..27935485retrotransposon protein, putative, unclassified
LOC_Os11g47370Os.18443.1.S1_at7/1111+27938905..27941284expressed protein
LOC_Os11g47379NANA11+27942471..27943166NA
LOC_Os11g47390OsAffx.7441.1.S1_at11/1111+27950341..27952587laccase, putative
LOC_Os11g47390OsAffx.29827.1.S1_at1/1111+27950341..27952587laccase, putative

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7440.1.S1_at--791--1591Chr11:27927513..27927537 (25 bp)
AGCTGCCCATGACATCCATGGATCT
LOC_Os11g47350
OsAffx.7440.1.S1_at--163--5391Chr11:27927550..27927574 (25 bp)
GAAGCACGGCTACCCTGGAAGGACA
LOC_Os11g47350
OsAffx.7440.1.S1_at--436--2091Chr11:27927572..27927596 (25 bp)
ACATACAAGTTCTACGACGGCCCGG
LOC_Os11g47350
OsAffx.7440.1.S1_at--224--2831Chr11:27927635..27927659 (25 bp)
AAGTTCCTCTACGAGATGGGCACCA
LOC_Os11g47350
OsAffx.7440.1.S1_at--522--1451Chr11:27927702..27927726 (25 bp)
AGAAGCTCAGCTACAAGTCCGGCGT
LOC_Os11g47350
OsAffx.7440.1.S1_at--1023--8251Chr11:27927739..27927763 (25 bp)
GGCATGCCCGGCGATCAACGTGAAC
LOC_Os11g47350
OsAffx.7440.1.S1_at--33--7371Chr11:27927758..27927782 (25 bp)
GTGAACGGCCACGTGTGCACCGAGA
LOC_Os11g47350
OsAffx.7440.1.S1_at--932--5991Chr11:27927779..27927803 (25 bp)
GAGACCGTCAGCTTCAACGTGAGCG
LOC_Os11g47350
OsAffx.7440.1.S1_at--756--7391Chr11:27927839..27927863 (25 bp)
GTGATCGTGTTCAGCAAGCCGCCGG
LOC_Os11g47350
OsAffx.7440.1.S1_at--540--8911Chr11:27927942..27927966 (25 bp)
TGAGCTTCGAGCTCAACGTGTGCAA
LOC_Os11g47350
OsAffx.7440.1.S1_at--612--8271Chr11:27927974..27927998 (25 bp)
GGCATCGTCGAGAAGACGGCCTACA
LOC_Os11g47350
Target Sequence 
AGCTGCCCATGACATCCATGGATCTCCGGCCGGTGGCGAAGCACGGCTACCCTGGAAGGACATACAAGTTCTACGACGGC
CCGGACGTGCTCTACCCGTTCGGCTACGGCCTCAGCTACACCAAGTTCCTCTACGAGATGGGCACCAACGGCACCGCCCT
CATCGTCCCCGTCGCCGGCGGCCACTGCAAGAAGCTCAGCTACAAGTCCGGCGTGTCAACCGCACCGGCATGCCCGGCGA
TCAACGTGAACGGCCACGTGTGCACCGAGACCGTCAGCTTCAACGTGAGCGTCACCAACGGCGGCGACACGGGCGGCAGC
CACCCGGTGATCGTGTTCAGCAAGCCGCCGGCGGAGGTGGACGACGCGCCGATGAAGCAGGTGGTGGCGTTCAAGAGCGT
GTTCGTCCCGGCGTGGAGCACGGTAAGCGTGAGCTTCGAGCTCAACGTGTGCAAGGCGTTCGGCATCGTCGAGAAGACGG
CCTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7440.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis