Browse Element(s) Details


OsAffx.31526.1.S1_at

Description tigr:9639.m04399
TID=OsAffx.31526.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4701911/11hypothetical protein
LOC_Os11g4722911/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g46960OsAffx.19417.1.S1_at4/1111+27666274..27669689Leucine Rich Repeat family protein, expressed
LOC_Os11g46960OsAffx.19417.2.S1_x_at2/1111+27666274..27669689Leucine Rich Repeat family protein, expressed
LOC_Os11g46960OsAffx.19417.1.S1_x_at1/1111+27666274..27669689Leucine Rich Repeat family protein, expressed
LOC_Os11g46970OsAffx.31524.2.S1_x_at11/1111+27670498..27673888Leucine Rich Repeat family protein, expressed
LOC_Os11g46970OsAffx.31524.1.S1_at9/1111+27670498..27673888Leucine Rich Repeat family protein, expressed
LOC_Os11g46970OsAffx.31524.1.S1_x_at8/1111+27670498..27673888Leucine Rich Repeat family protein, expressed
LOC_Os11g46980OsAffx.19417.1.S1_at4/1111+27677599..27682626Leucine Rich Repeat family protein
LOC_Os11g46980OsAffx.19417.2.S1_x_at2/1111+27677599..27682626Leucine Rich Repeat family protein
LOC_Os11g46980OsAffx.19417.1.S1_x_at1/1111+27677599..27682626Leucine Rich Repeat family protein
LOC_Os11g46990NANA11+27683700..27684131retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g47000OsAffx.19417.1.S1_x_at11/1111+27688448..27692198Leucine Rich Repeat family protein
LOC_Os11g47000OsAffx.19417.1.S1_at11/1111+27688448..27692198Leucine Rich Repeat family protein
LOC_Os11g47000OsAffx.19417.2.S1_x_at8/1111+27688448..27692198Leucine Rich Repeat family protein
LOC_Os11g47000OsAffx.19417.2.S1_at4/1111+27688448..27692198Leucine Rich Repeat family protein
LOC_Os11g47000OsAffx.31524.1.S1_x_at1/1111+27688448..27692198Leucine Rich Repeat family protein
LOC_Os11g47000Os.46824.2.S1_at1/1111+27688448..27692198Leucine Rich Repeat family protein
LOC_Os11g47010NANA11+27692707..27693747retrotransposon protein, putative, unclassified
LOC_Os11g47019OsAffx.31526.1.S1_at11/1111+27694479..27695027hypothetical protein
LOC_Os11g47030OsAffx.19418.1.S1_at11/1111+27697364..27700795Leucine Rich Repeat family protein
LOC_Os11g47040NANA11+27708780..27709285expressed protein
LOC_Os11g47050Os.10827.1.S1_x_at3/1111+27713071..27714945transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47050Os.46055.2.S1_x_at2/1111+27713071..27714945transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47060OsAffx.7437.1.S1_at11/1111+27715235..27715606expressed protein
LOC_Os11g47070OsAffx.25936.2.S1_x_at5/1111+27718121..27721184transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47070OsAffx.25936.7.S1_s_at3/1111+27718121..27721184transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47070OsAffx.25936.1.S1_s_at3/1111+27718121..27721184transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47070OsAffx.25936.5.S1_x_at2/1111+27718121..27721184transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47070OsAffx.17387.1.S1_s_at1/1111+27718121..27721184transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31526.1.S1_at--1039--10512Chr11:27847507..27847531 (25 bp)
TTCACATCTCTTATGGTGATGGCCA
LOC_Os11g47229
OsAffx.31526.1.S1_at--632--7392Chr11:27847522..27847546 (25 bp)
GTGATGGCCACCGTAAATTTCTCAT
LOC_Os11g47229
OsAffx.31526.1.S1_at--51--9852Chr11:27847535..27847559 (25 bp)
TAAATTTCTCATCCGGTCATACTAC
LOC_Os11g47229
OsAffx.31526.1.S1_at--145--3532Chr11:27847544..27847566 (23 bp)
CATCCGGTCATACTACACAAGGTGG
LOC_Os11g47229
OsAffx.31526.1.S1_at--99--2972Chr11:27847833..27847857 (25 bp)
AATGGATTCGTGCATGGTCCTTGTA
LOC_Os11g47229
OsAffx.31526.1.S1_at--384--812Chr11:27847846..27847870 (25 bp)
ATGGTCCTTGTAAATTGCGATATGA
LOC_Os11g47229
OsAffx.31526.1.S1_at--159--1132Chr11:27847874..27847898 (25 bp)
AGTGCATGAGTGACTGCCAAATCAA
LOC_Os11g47229
OsAffx.31526.1.S1_at--892--8692Chr11:27847916..27847940 (25 bp)
TGTGCGACGGCGAGTCGAACGACCA
LOC_Os11g47229
OsAffx.31526.1.S1_at--34--6112Chr11:27847927..27847951 (25 bp)
GAGTCGAACGACCACTGCTGCTGTA
LOC_Os11g47229
OsAffx.31526.1.S1_at--835--1972Chr11:27847940..27847964 (25 bp)
ACTGCTGCTGTACTGATGAGGCCCG
LOC_Os11g47229
OsAffx.31526.1.S1_at--152--8872Chr11:27847956..27847980 (25 bp)
TGAGGCCCGCACAAATAATAGATTT
LOC_Os11g47229
Target Sequence 
TTCACATCTCTTATGGTGATGGCCACCGTAAATTTCTCATCCGGTCATACTACACAAGGTGGATATGGAGAAATGGATTC
GTGCATGGTCCTTGTAAATTGCGATATGAACAAGTGCATGAGTGACTGCCAAATCAAGGGGTTCAACGGAGGCCTGTGCG
ACGGCGAGTCGAACGACCACTGCTGCTGTACTGATGAGGCCCGCACAAATAATAGATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31526.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis