Browse Element(s) Details


OsAffx.17387.1.S1_s_at

Description tigr:9636.m03807
TID=OsAffx.17387.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3789011/11expressed protein
LOC_Os11g470701/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37850OsAffx.27865.1.S1_x_at4/118+23843981..23846807transposon protein, putative, Pong sub-class
LOC_Os08g37860OsAffx.29576.2.S1_at11/118+23849807..23853122hypothetical protein
LOC_Os08g37860OsAffx.29576.2.S1_x_at11/118+23849807..23853122hypothetical protein
LOC_Os08g37874Os.23397.1.S2_at11/118+23855127..238634512-nitropropane dioxygenase family, putative, expressed
LOC_Os08g37874Os.23397.1.S1_at10/118+23855127..238634512-nitropropane dioxygenase family, putative, expressed
LOC_Os08g37890OsAffx.17387.1.S1_at11/118+23866034..23867325expressed protein
LOC_Os08g37890OsAffx.17387.1.S1_s_at11/118+23866034..23867325expressed protein
LOC_Os08g37890Os.2251.1.S1_at11/118+23866034..23867325expressed protein
LOC_Os08g37904Os.8726.3.S1_at11/118+23870030..23878275Zinc finger, C2H2 type family protein, expressed
LOC_Os08g37904Os.8726.1.S1_at10/118+23870030..23878275Zinc finger, C2H2 type family protein, expressed
LOC_Os08g37904Os.8726.1.S2_at10/118+23870030..23878275Zinc finger, C2H2 type family protein, expressed
LOC_Os08g37920Os.8726.2.S1_at11/118+23882219..23887812Zinc finger, C2H2 type family protein, expressed
LOC_Os08g37930OsAffx.17389.1.S1_s_at10/118+23887808..23889828Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os08g37940Os.56997.1.S1_at11/118+23890701..23894330HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os08g37940OsAffx.30715.2.S1_s_at1/118+23890701..23894330HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17387.1.S1_s_at--771--7231Chr08:23866338..23866362 (25 bp)
GTCGCGGCAGTGTTCCTCTCTGCGT
LOC_Os08g37890
OsAffx.17387.1.S1_s_at--421--8271Chr08:23866343..23866367 (25 bp)
GGCAGTGTTCCTCTCTGCGTTGCTG
LOC_Os08g37890
OsAffx.17387.1.S1_s_at--3--7431Chr08:23866347..23866371 (25 bp)
GTGTTCCTCTCTGCGTTGCTGCTCG
LOC_Os08g37890
OsAffx.17387.1.S1_s_at--905--5871Chr08:23866600..23866624 (25 bp)
GAGCCCGCCGAGCTGCTACAGCAAG
LOC_Os08g37890
OsAffx.17387.1.S1_s_at--535--9071Chr08:23866613..23866637 (25 bp)
TGCTACAGCAAGTGCTACGGGTGCA
LOC_Os08g37890
OsAffx.17387.1.S1_s_at--521--2151Chr08:23866617..23866641 (25 bp)
ACAGCAAGTGCTACGGGTGCAGCCC
LOC_Os08g37890
OsAffx.17387.1.S1_s_at--1068--3211Chr08:23866621..23866645 (25 bp)
CAAGTGCTACGGGTGCAGCCCGTGC
LOC_Os08g37890
OsAffx.17387.1.S1_s_at--758--5071Chr08:23866635..23866659 (25 bp)
GCAGCCCGTGCGTCGCGGTGCAGGT
LOC_Os08g37890
OsAffx.17387.1.S1_s_at--415--4131Chr08:23866718..23866742 (25 bp)
CGCTCGTGGCGACGTTCACCAACTA
LOC_Os08g37890
OsAffx.17387.1.S1_s_at--1010--2252Chr11:27718917..27718949 (24 bp)
AACTACAAGCCGCTAGGGTGGAAGT
LOC_Os11g47070
OsAffx.17387.1.S1_s_at--835--3731Chr08:23866740..23866764 (25 bp)
CTACAAGCCGCTAGGGTGGAAGTGC
LOC_Os08g37890
Target Sequence 
GTCGCGGCAGTGTTCCTCTCTGCGTTGCTGCTCGCCTCCGCCTCCGCCTCCGCCTCCAGGCTCCCTCCTCCTCGCCGTCT
TCTTCCCCTGTTGATGCGCTGTGTGTTCGTCCATGGCGATGCCGATGCAGGTTGGTGGCGAGGTGGCGGTGGCGGTGGTG
GCTGGGGAGGAGGAGAAGGTGCGGCTGGGGTCGAGCCCGCCGAGCTGCTACAGCAAGTGCTACGGGTGCAGCCCGTGCGT
CGCGGTGCAGGTGCCCACCTTGTCCGCCCCGTCCGTCCCCGCCGCCGCCGCGCCGCGCACGACGCCGCGCCGCTCGTGGC
GACGTTCACCAACTACAAGCCGCTAGGGTGGAAGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17387.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis