Browse Element(s) Details


Os.8726.2.S1_at

Description gb:AK069097.1
DB_XREF= gi:32979121
TID=Os.8726.2
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8726 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023004M17, full insert sequence.
FL= gb:AK068131.1 gb:AK069097.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3792011/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37874Os.23397.1.S2_at11/118+23855127..238634512-nitropropane dioxygenase family, putative, expressed
LOC_Os08g37874Os.23397.1.S1_at10/118+23855127..238634512-nitropropane dioxygenase family, putative, expressed
LOC_Os08g37890OsAffx.17387.1.S1_at11/118+23866034..23867325expressed protein
LOC_Os08g37890OsAffx.17387.1.S1_s_at11/118+23866034..23867325expressed protein
LOC_Os08g37890Os.2251.1.S1_at11/118+23866034..23867325expressed protein
LOC_Os08g37904Os.8726.3.S1_at11/118+23870030..23878275Zinc finger, C2H2 type family protein, expressed
LOC_Os08g37904Os.8726.1.S1_at10/118+23870030..23878275Zinc finger, C2H2 type family protein, expressed
LOC_Os08g37904Os.8726.1.S2_at10/118+23870030..23878275Zinc finger, C2H2 type family protein, expressed
LOC_Os08g37920Os.8726.2.S1_at11/118+23882219..23887812Zinc finger, C2H2 type family protein, expressed
LOC_Os08g37930OsAffx.17389.1.S1_s_at10/118+23887808..23889828Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os08g37940Os.56997.1.S1_at11/118+23890701..23894330HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os08g37940OsAffx.30715.2.S1_s_at1/118+23890701..23894330HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os08g37950Os.12449.1.A1_at11/118+23898429..23906472Copper-transporting ATPase PAA1, putative, expressed
LOC_Os08g37960Os.15015.1.S1_a_at11/118+23907313..23910459transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008327molecular_functionmethyl-CpG binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8726.2.S1_at--499--2931Chr08:23887276..23887300 (25 bp)
AAGGCATGCTCCCAGTGTTATGTAT
LOC_Os08g37920
Os.8726.2.S1_at--498--10411Chr08:23887325..23887349 (25 bp)
TTTTGGCCCCATTGATGCACAGCAA
LOC_Os08g37920
Os.8726.2.S1_at--763--5191Chr08:23887346..23887370 (25 bp)
GCAATCTGGTTCGTTTGGTTTCATT
LOC_Os08g37920
Os.8726.2.S1_at--757--6831Chr08:23887363..23887387 (25 bp)
GTTTCATTTGCCCAGCTTGCAAGGA
LOC_Os08g37920
Os.8726.2.S1_at--869--9751Chr08:23887406..23887430 (25 bp)
TAATGCGCCCAATAACGGTCCATGG
LOC_Os08g37920
Os.8726.2.S1_at--697--7531Chr08:23887448..23887472 (25 bp)
GTGGCTGGTCTACAATCATTTCTGT
LOC_Os08g37920
Os.8726.2.S1_at--287--10611Chr08:23887467..23887491 (25 bp)
TTCTGTTGCTGGATCTTTGGTCTAA
LOC_Os08g37920
Os.8726.2.S1_at--1134--10231Chr08:23887555..23887579 (25 bp)
TTTGTGGACTCTCTTCTGTACGTAC
LOC_Os08g37920
Os.8726.2.S1_at--508--10511Chr08:23887660..23887684 (25 bp)
TTCAAGGGTTGTACGCAGCCATCAT
LOC_Os08g37920
Os.8726.2.S1_at--191--1031Chr08:23887738..23887762 (25 bp)
AGGTACAAGTTGATCGCACGCTGAT
LOC_Os08g37920
Os.8726.2.S1_at--862--6371Chr08:23887760..23887784 (25 bp)
GATCGCGTGATAGACCTGGTACTGG
LOC_Os08g37920
Target Sequence 
AAGGCATGCTCCCAGTGTTATGTATATGGTGCAACAGCCAATTCCACCATTTTGGCCCCATTGATGCACAGCAATCTGGT
TCGTTTGGTTTCATTTGCCCAGCTTGCAAGGAGAAGATGTCAGGCAATCCTAATGCGCCCAATAACGGTCCATGGCAACC
ATGATAACTGTTGTGGCTGGTCTACAATCATTTCTGTTGCTGGATCTTTGGTCTAAGGTTAGCTGCGGTGTGCCTGCACC
CCAGAGTTTTAGTAGGGTATCTAGGAACGATGTCTGTATTTTGTGGACTCTCTTCTGTACGTACTTCTGTTGAAATGTGA
AGAAAACCCCAAGAGAAAAACCCACTGAATGTTGTACTTTTGGCAGGATGGATCTCCAGTAAGATTCAAGGGTTGTACGC
AGCCATCATCCAAAAAGAGTTTATGAGATAGATTTTGATGTAGTATTATTGTTTGGCAACAAAGGTACAAGTTGATCGCA
CGCTGATCGCGTGATAGACCTGGTACTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8726.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis