Browse Element(s) Details


Os.56997.1.S1_at

Description gb:AK110716.1
DB_XREF= gi:32995925
TID=Os.56997.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56997 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-170-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-170-D07, full insert sequence.
FL= gb:AK110716.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3794011/11HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37890OsAffx.17387.1.S1_at11/118+23866034..23867325expressed protein
LOC_Os08g37890OsAffx.17387.1.S1_s_at11/118+23866034..23867325expressed protein
LOC_Os08g37890Os.2251.1.S1_at11/118+23866034..23867325expressed protein
LOC_Os08g37904Os.8726.3.S1_at11/118+23870030..23878275Zinc finger, C2H2 type family protein, expressed
LOC_Os08g37904Os.8726.1.S1_at10/118+23870030..23878275Zinc finger, C2H2 type family protein, expressed
LOC_Os08g37904Os.8726.1.S2_at10/118+23870030..23878275Zinc finger, C2H2 type family protein, expressed
LOC_Os08g37920Os.8726.2.S1_at11/118+23882219..23887812Zinc finger, C2H2 type family protein, expressed
LOC_Os08g37930OsAffx.17389.1.S1_s_at10/118+23887808..23889828Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os08g37940Os.56997.1.S1_at11/118+23890701..23894330HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os08g37940OsAffx.30715.2.S1_s_at1/118+23890701..23894330HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os08g37950Os.12449.1.A1_at11/118+23898429..23906472Copper-transporting ATPase PAA1, putative, expressed
LOC_Os08g37960Os.15015.1.S1_a_at11/118+23907313..23910459transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g37970OsAffx.29578.1.S1_at11/118+23918865..23920364Myb-like DNA-binding domain containing protein, expressed
LOC_Os08g37970Os.57514.1.S1_x_at1/118+23918865..23920364Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56997.1.S1_at--578--9811Chr08:23891468..23891492 (25 bp)
TAACATATACTCCTTCGACTGCTAA
LOC_Os08g37940
Os.56997.1.S1_at--1080--5711Chr08:23891380..23891476 (25 bp)
GACTGCTAACCAAGATTTCTCGGAT
LOC_Os08g37940
Os.56997.1.S1_at--1011--1251Chr08:23891368..23891391 (24 bp)
AGATTTCTCGGATGCAATTGCCACC
LOC_Os08g37940
Os.56997.1.S1_at--515--10691Chr08:23891351..23891375 (25 bp)
TTGCCACCTATCCTGATCTCAGTAA
LOC_Os08g37940
Os.56997.1.S1_at--874--5831Chr08:23891248..23891272 (25 bp)
GACCTCAAGTTGTTGCTCCAAAAAT
LOC_Os08g37940
Os.56997.1.S1_at--368--2271Chr08:23891227..23891251 (25 bp)
AAATCTCTTGTTACTGGATAGCGAA
LOC_Os08g37940
Os.56997.1.S1_at--24--6492Chr09:449411..449460 (25 bp)
GATAGCGAAGTGCTTTTGTCCAAAA
NONE
Os.56997.1.S1_at--566--6791Chr08:23891067..23891183 (25 bp)
GTTATCCACAAAGTTCACGTCTAGA
LOC_Os08g37940
Os.56997.1.S1_at--757--231Chr08:23891031..23891055 (25 bp)
ATATATCTTGTTTCAGCCTCTTGGT
LOC_Os08g37940
Os.56997.1.S1_at--153--4731Chr08:23890862..23890886 (25 bp)
GCTGGTGAATCCAAGCAGTCATATT
LOC_Os08g37940
Os.56997.1.S1_at--458--10791Chr08:23890839..23890863 (25 bp)
TTGTTGACTGGTTTGCGTTTGGCAC
LOC_Os08g37940
Target Sequence 
TAACATATACTCCTTCGACTGCTAACCAAGATTTCTCGGATGCAATTGCCACCTATCCTGATCTCAGTAATGTGGGGCTT
GAGGACCTCAAGTTGTTGCTCCAAAAATCTCTTGTTACTGGATAGCGAAGTGCTTTTGTCCAAAAAATAATTGACAAATT
TATGTATGCATTGTTATCCACAAAGTTCACGTCTAGATTCAAGCTAGAATATATCTTGTTTCAGCCTCTTGGTGTCTTCA
AGATCAACCAAATGTTGGACAGCGAAGATGCTGATACATTCTTTGAGAATTTCTGTACAGTGTTGTAAGAAGGAAAAGCC
AACCAATCACCCCAAAAAAAAAAAAACTTTCAGCTGGAGTTACAGGTGGAACATGCAGCTGGTGAATCCAAGCAGTCATA
TTGTTGACTGGTTTGCGTTTGGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56997.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis