Browse Element(s) Details


Os.2251.1.S1_at

Description gb:AF069773.1
DB_XREF= gi:4106375
GEN=DD3
TID=Os.2251.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2251 (NCBI UniGene Cluster)
DEF=Oryza sativa putative type 1a plasma membrane receptor (DD3) mRNA, complete cds.
PROD=putative type 1a plasma membrane receptor
FL= gb:AF069773.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3789011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37850OsAffx.27865.1.S1_x_at4/118+23843981..23846807transposon protein, putative, Pong sub-class
LOC_Os08g37860OsAffx.29576.2.S1_at11/118+23849807..23853122hypothetical protein
LOC_Os08g37860OsAffx.29576.2.S1_x_at11/118+23849807..23853122hypothetical protein
LOC_Os08g37874Os.23397.1.S2_at11/118+23855127..238634512-nitropropane dioxygenase family, putative, expressed
LOC_Os08g37874Os.23397.1.S1_at10/118+23855127..238634512-nitropropane dioxygenase family, putative, expressed
LOC_Os08g37890OsAffx.17387.1.S1_at11/118+23866034..23867325expressed protein
LOC_Os08g37890OsAffx.17387.1.S1_s_at11/118+23866034..23867325expressed protein
LOC_Os08g37890Os.2251.1.S1_at11/118+23866034..23867325expressed protein
LOC_Os08g37904Os.8726.3.S1_at11/118+23870030..23878275Zinc finger, C2H2 type family protein, expressed
LOC_Os08g37904Os.8726.1.S1_at10/118+23870030..23878275Zinc finger, C2H2 type family protein, expressed
LOC_Os08g37904Os.8726.1.S2_at10/118+23870030..23878275Zinc finger, C2H2 type family protein, expressed
LOC_Os08g37920Os.8726.2.S1_at11/118+23882219..23887812Zinc finger, C2H2 type family protein, expressed
LOC_Os08g37930OsAffx.17389.1.S1_s_at10/118+23887808..23889828Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os08g37940Os.56997.1.S1_at11/118+23890701..23894330HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os08g37940OsAffx.30715.2.S1_s_at1/118+23890701..23894330HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2251.1.S1_at--855--4571Chr08:23866864..23866888 (25 bp)
GCGCTCTCGCTGTGAATTACGGTGT
LOC_Os08g37890
Os.2251.1.S1_at--847--6491Chr08:23866990..23867014 (25 bp)
GATAGATTCCGTGTAATATGCCAGG
LOC_Os08g37890
Os.2251.1.S1_at--954--2191Chr08:23867015..23867039 (25 bp)
ACAAAATTTTGTCACCGCTGCTGCT
LOC_Os08g37890
Os.2251.1.S1_at--745--651Chr08:23867044..23867068 (25 bp)
ATGCAGCTGGATCGGCTCGGCTACT
LOC_Os08g37890
Os.2251.1.S1_at--835--9891Chr08:23867065..23867089 (25 bp)
TACTTTCACCACCTATACTGTATCT
LOC_Os08g37890
Os.2251.1.S1_at--127--9931Chr08:23867080..23867104 (25 bp)
TACTGTATCTTTCACTGGCATCTGC
LOC_Os08g37890
Os.2251.1.S1_at--561--471Chr08:23867099..23867123 (25 bp)
ATCTGCTCGCCGTTTTGGAATCTCT
LOC_Os08g37890
Os.2251.1.S1_at--305--6691Chr08:23867134..23867158 (25 bp)
GTTGCCTCTTGCATGTACACATGTT
LOC_Os08g37890
Os.2251.1.S1_at--1036--10371Chr08:23867158..23867182 (25 bp)
TTTTCATGTATCGATCCATGCCTCC
LOC_Os08g37890
Os.2251.1.S1_at--743--591Chr08:23867175..23867199 (25 bp)
ATGCCTCCTCCATGGAATCTAATGG
LOC_Os08g37890
Os.2251.1.S1_at--243--8651Chr08:23867197..23867221 (25 bp)
TGGGAATCCATCATCGTTCATGCTG
LOC_Os08g37890
Target Sequence 
GCGCTCTCGCTGTGAATTACGGTGTGTGTGGCCGCGTCGCGTGCCCGGCAGCACATGGCGCTGCACTGCTGCTGATGCTG
GTGGTGGTGGAATCGTTGTCGTCGCGTCGGGCTGAGAGGGATTGTTGATAGATTCCGTGTAATATGCCAGGACAAAATTT
TGTCACCGCTGCTGCTGCCCATGCAGCTGGATCGGCTCGGCTACTTTCACCACCTATACTGTATCTTTCACTGGCATCTG
CTCGCCGTTTTGGAATCTCTGCGGTGTGGGGTTGCCTCTTGCATGTACACATGTTTTTCATGTATCGATCCATGCCTCCT
CCATGGAATCTAATGGGAATCCATCATCGTTCATGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2251.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis