Browse Element(s) Details


OsAffx.29576.2.S1_at

Description tigr:9636.m03804
TID=OsAffx.29576.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3786011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37820Os.15847.1.A1_at11/118+23824209..23828119expressed protein
LOC_Os08g37820OsAffx.17386.1.S1_at11/118+23824209..23828119expressed protein
LOC_Os08g37830OsAffx.6061.1.S1_at11/118+23835658..23836080hypothetical protein
LOC_Os08g37840Os.14366.1.S1_s_at11/118+23836502..23837787Phosphate-induced protein 1 conserved region containing protein, expressed
LOC_Os08g37840Os.14366.1.S1_at10/118+23836502..23837787Phosphate-induced protein 1 conserved region containing protein, expressed
LOC_Os08g37850OsAffx.27865.1.S1_x_at4/118+23843981..23846807transposon protein, putative, Pong sub-class
LOC_Os08g37860OsAffx.29576.2.S1_at11/118+23849807..23853122hypothetical protein
LOC_Os08g37860OsAffx.29576.2.S1_x_at11/118+23849807..23853122hypothetical protein
LOC_Os08g37874Os.23397.1.S2_at11/118+23855127..238634512-nitropropane dioxygenase family, putative, expressed
LOC_Os08g37874Os.23397.1.S1_at10/118+23855127..238634512-nitropropane dioxygenase family, putative, expressed
LOC_Os08g37890OsAffx.17387.1.S1_at11/118+23866034..23867325expressed protein
LOC_Os08g37890OsAffx.17387.1.S1_s_at11/118+23866034..23867325expressed protein
LOC_Os08g37890Os.2251.1.S1_at11/118+23866034..23867325expressed protein
LOC_Os08g37904Os.8726.3.S1_at11/118+23870030..23878275Zinc finger, C2H2 type family protein, expressed
LOC_Os08g37904Os.8726.1.S1_at10/118+23870030..23878275Zinc finger, C2H2 type family protein, expressed
LOC_Os08g37904Os.8726.1.S2_at10/118+23870030..23878275Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29576.2.S1_at--474--8591Chr08:23851263..23851287 (25 bp)
TGGTCGTGGTCCGATCCCACCGGTG
LOC_Os08g37860
OsAffx.29576.2.S1_at--58--7191Chr08:23851265..23851289 (25 bp)
GTCGTGGTCCGATCCCACCGGTGGC
LOC_Os08g37860
OsAffx.29576.2.S1_at--87--9531Chr08:23851368..23851392 (25 bp)
TCTCAGCTTGATCGCTCGCTAGTGA
LOC_Os08g37860
OsAffx.29576.2.S1_at--1049--9651Chr08:23851370..23851394 (25 bp)
TCAGCTTGATCGCTCGCTAGTGAGA
LOC_Os08g37860
OsAffx.29576.2.S1_at--162--3411Chr08:23851371..23851395 (25 bp)
CAGCTTGATCGCTCGCTAGTGAGAG
LOC_Os08g37860
OsAffx.29576.2.S1_at--516--1551Chr08:23851372..23851396 (25 bp)
AGCTTGATCGCTCGCTAGTGAGAGT
LOC_Os08g37860
OsAffx.29576.2.S1_at--201--3631Chr08:23851374..23851398 (25 bp)
CTTGATCGCTCGCTAGTGAGAGTTG
LOC_Os08g37860
OsAffx.29576.2.S1_at--525--10731Chr08:23851375..23851399 (25 bp)
TTGATCGCTCGCTAGTGAGAGTTGG
LOC_Os08g37860
OsAffx.29576.2.S1_at--277--8851Chr08:23851376..23851400 (25 bp)
TGATCGCTCGCTAGTGAGAGTTGGA
LOC_Os08g37860
OsAffx.29576.2.S1_at--559--531Chr08:23851378..23851402 (25 bp)
ATCGCTCGCTAGTGAGAGTTGGAGC
LOC_Os08g37860
OsAffx.29576.2.S1_at--479--9351Chr08:23851379..23851403 (25 bp)
TCGCTCGCTAGTGAGAGTTGGAGCA
LOC_Os08g37860
Target Sequence 
TGGTCGTGGTCCGATCCCACCGGTGGCGCCAAGGATGGCAACCTTGTAGCTGCCGGCCTGCGCGACGACCCGGTTTCCGG
CGCGCTGCCATGGCCGCCGCCTCGGTCTCAGCTTGATCGCTCGCTAGTGAGAGTTGGAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29576.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis