Browse Element(s) Details

Os.14366.1.S1_at

Description

gb:AK073011.1
DB_XREF= gi:32983034
TID=Os.14366.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14366 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023145I01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023145I01, full insert sequence.
FL= gb:AK073011.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os08g37840	10/11	Phosphate-induced protein 1 conserved region containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os08g37800	Os.338.1.S2_a_at	11/11	8	+	23809394..23814568	Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800	Os.338.4.S1_s_at	11/11	8	+	23809394..23814568	Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800	Os.338.2.S1_x_at	11/11	8	+	23809394..23814568	Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800	Os.338.1.S2_x_at	9/11	8	+	23809394..23814568	Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800	Os.338.1.S1_x_at	7/11	8	+	23809394..23814568	Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800	Os.338.3.S1_x_at	6/11	8	+	23809394..23814568	Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37810	Os.6016.1.A1_s_at	11/11	8	+	23818520..23820148	expressed protein
LOC_Os08g37810	Os.6016.1.A1_at	11/11	8	+	23818520..23820148	expressed protein
LOC_Os08g37820	Os.15847.1.A1_at	11/11	8	+	23824209..23828119	expressed protein
LOC_Os08g37820	OsAffx.17386.1.S1_at	11/11	8	+	23824209..23828119	expressed protein
LOC_Os08g37830	OsAffx.6061.1.S1_at	11/11	8	+	23835658..23836080	hypothetical protein
LOC_Os08g37840	Os.14366.1.S1_s_at	11/11	8	+	23836502..23837787	Phosphate-induced protein 1 conserved region containing protein, expressed
LOC_Os08g37840	Os.14366.1.S1_at	10/11	8	+	23836502..23837787	Phosphate-induced protein 1 conserved region containing protein, expressed
LOC_Os08g37850	OsAffx.27865.1.S1_x_at	4/11	8	+	23843981..23846807	transposon protein, putative, Pong sub-class
LOC_Os08g37860	OsAffx.29576.2.S1_at	11/11	8	+	23849807..23853122	hypothetical protein
LOC_Os08g37860	OsAffx.29576.2.S1_x_at	11/11	8	+	23849807..23853122	hypothetical protein
LOC_Os08g37874	Os.23397.1.S2_at	11/11	8	+	23855127..23863451	2-nitropropane dioxygenase family, putative, expressed
LOC_Os08g37874	Os.23397.1.S1_at	10/11	8	+	23855127..23863451	2-nitropropane dioxygenase family, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.14366.1.S1_at--87--361	1	Chr08:23836523..23836547 (25 bp)	CATTGTTCATGGGTTCGTTGATCGT	LOC_Os08g37840
Os.14366.1.S1_at--517--1079	1	Chr08:23836521..23836545 (25 bp)	TTGTTCATGGGTTCGTTGATCGTTG	LOC_Os08g37840
Os.14366.1.S1_at--860--673	1	Chr08:23836519..23836543 (25 bp)	GTTCATGGGTTCGTTGATCGTTGAC	LOC_Os08g37840
Os.14366.1.S1_at--263--963	1	Chr08:23836517..23836541 (25 bp)	TCATGGGTTCGTTGATCGTTGACAT	LOC_Os08g37840
Os.14366.1.S1_at--387--81	1	Chr08:23836515..23836539 (25 bp)	ATGGGTTCGTTGATCGTTGACATCT	LOC_Os08g37840
Os.14366.1.S1_at--1062--767	1	Chr08:23836513..23836537 (25 bp)	GGGTTCGTTGATCGTTGACATCTCA	LOC_Os08g37840
Os.14366.1.S1_at--845--671	1	Chr08:23836511..23836535 (25 bp)	GTTCGTTGATCGTTGACATCTCAAG	LOC_Os08g37840
Os.14366.1.S1_at--667--939	1	Chr08:23836509..23836533 (25 bp)	TCGTTGATCGTTGACATCTCAAGCA	LOC_Os08g37840
Os.14366.1.S1_at--125--665	1	Chr08:23836508..23836531 (24 bp)	GTTGATCGTTGACATCTCAAGCAAG	LOC_Os08g37840
Os.14366.1.S1_at--649--883	1	Chr08:23836508..23836529 (22 bp)	TGATCGTTGACATCTCAAGCAAGGC	LOC_Os08g37840
Os.14366.1.S1_at--787--51	1	Chr08:23836502..23836527 (25 bp)	ATCGTTGACATCTCAAGCAAGGCCG	NONE

Target Sequence

CATTGTTCATGGGTTCGTTGATCGTTGACATCTCAAGCAAGGCCG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis