Browse Element(s) Details


Os.338.3.S1_x_at

Description gb:AK069206.1
DB_XREF= gi:32979230
TID=Os.338.3
CNT=30
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.338 (NCBI UniGene Cluster)
UG_TITLE=MRNA for OSK4, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023008I17, full insert sequence.
FL= gb:AK069206.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1798011/11Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g378006/11Carbon catabolite derepressing protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17920Os.52177.1.S1_at11/113+9960342..9965612pseudouridine synthase family protein, putative, expressed
LOC_Os03g17930Os.13621.1.S1_at11/113+9966269..9969439Alpha-taxilin, putative, expressed
LOC_Os03g17940Os.56999.1.S1_at11/113+9969564..9972358PAP2 superfamily protein, expressed
LOC_Os03g17940Os.25160.1.S1_at1/113+9969564..9972358PAP2 superfamily protein, expressed
LOC_Os03g17950Os.53449.1.A1_at11/113+9973968..9977959expressed protein
LOC_Os03g17960Os.53834.1.S1_at11/113+9978689..9981787expressed protein
LOC_Os03g17970OsAffx.12905.1.S1_at11/113+9982241..9982695hypothetical protein
LOC_Os03g17980Os.338.1.S2_a_at11/113+9985441..9991075Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os03g17980Os.338.3.S1_x_at11/113+9985441..9991075Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os03g17980Os.338.1.S2_x_at8/113+9985441..9991075Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os03g17980Os.338.1.S1_x_at8/113+9985441..9991075Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os03g17980Os.338.2.S1_x_at7/113+9985441..9991075Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os03g17980Os.338.4.S1_s_at2/113+9985441..9991075Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os03g17990Os.25001.1.S1_at11/113+9995552..9998559Yip1 domain containing protein, expressed
LOC_Os03g18000OsAffx.3265.1.S1_at10/113+10003272..10003838phosphoinositide-specific phospholipase C, putative
LOC_Os03g18010OsAffx.25128.1.S1_at10/113+10004299..10006802phosphoinositide-specific phospholipase C, putative, expressed
LOC_Os03g18020OsAffx.12906.1.S1_at11/113+10007156..10008084rhodanese-like family protein, putative
LOC_Os03g18020Os.41415.2.S1_x_at1/113+10007156..10008084rhodanese-like family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0046777biological_processprotein amino acid autophosphorylation
GO:0000152cellular_componentnuclear ubiquitin ligase complex
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.338.3.S1_x_at--972--8511Chr03:9989780..9989878 (25 bp)
TGGACTTCAGTCACGAGCTCAACCT
LOC_Os03g17980
Os.338.3.S1_x_at--1025--2792Chr08:23813377..23813401 (25 bp)
AATGATTGAGGTCCTAAAGGCACTT
LOC_Os08g37800
Os.338.3.S1_x_at--517--5711Chr03:9990023..9990047 (25 bp)
GACTCAATCATAATGGATAACGGTG
LOC_Os03g17980
Os.338.3.S1_x_at--147--8831Chr03:9990046..9990070 (25 bp)
TGATGTAAATGGGAGGCTACCTGCT
LOC_Os03g17980
Os.338.3.S1_x_at--742--9972Chr08:23813556..23813580 (25 bp)
TACCTGCTGTGATCAAGTTTGAAAT
LOC_Os08g37800
Os.338.3.S1_x_at--765--5752Chr08:23813978..23814002 (25 bp)
GACGAGAAGTATCTGCTGGATATGC
LOC_Os08g37800
Os.338.3.S1_x_at--832--9652Chr08:23814019..23814043 (25 bp)
TCAGCTCCTTTTCCTGGACTTCTGT
LOC_Os08g37800
Os.338.3.S1_x_at--85--2372Chr08:23814105..23814129 (25 bp)
AAACCTAGGGTTTTATCATGTGCGG
LOC_Os08g37800
Os.338.3.S1_x_at--293--9632Chr08:23814120..23814144 (25 bp)
TCATGTGCGGTTTTTCACTGCAATA
LOC_Os08g37800
Os.338.3.S1_x_at--285--8951Chr03:9990672..9990696 (25 bp)
TGACTTTCTTCCCAGTCCTTAGACA
LOC_Os03g17980
Os.338.3.S1_x_at--731--9311Chr03:9990681..9990705 (25 bp)
TCCCAGTCCTTAGACAGCGAAGGTT
LOC_Os03g17980
Target Sequence 
TGGACTTCAGTCACGAGCTCAACCTCGCGAGATAATGATTGAGGTCCTAAAGGCACTTCAAGACTTAAATGTCTCCTGGA
AGAAGAATGGACAGTACAACATGAAATGCAGATGGAGCGTTGGGACTCAGGCCACTGATATGTTAGATGTTAACAACAGC
TTTGTTGATGACTCAATCATAATGGATAACGGTGATGTAAATGGGAGGCTACCTGCTGTGATCAAGTTTGAAATCCAGCT
TTACAAGACCAGAGACGAGAAGTATCTGCTGGATATGCAGAGAGTTACGGGGCCTCAGCTCCTTTTCCTGGACTTCTGTG
CAGACTTCCTTACCAAGCTGAGGGTTCTATAGTACCCTTGTGTTGGCTTCAGTGAAAAACCAAACCTAGGGTTTTATCAT
GTGCGGTTTTTCACTGCAATAATGAATAAAGGACACCATGTAAATAGGCAGCTGTGACTTTCTTCCCAGTCCTTAGACAG
CGAAGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.338.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis