Browse Element(s) Details


Os.338.4.S1_s_at

Description gb:D82037.1
DB_XREF= gi:4107004
TID=Os.338.4
CNT=10
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.338 (NCBI UniGene Cluster)
UG_TITLE=MRNA for OSK4, complete cds
DEF=Oryza sativa mRNA for OSK2, partial cds.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3780011/11Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os03g179802/11Carbon catabolite derepressing protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37760Os.17554.1.S1_at11/118+23788248..23789810Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g37760OsAffx.17384.1.S1_at11/118+23788248..23789810Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g37760OsAffx.17384.1.S1_s_at11/118+23788248..23789810Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g37770NANA8+23792703..23792963hypothetical protein
LOC_Os08g37780Os.21267.1.S1_at10/118+23794065..23801478NOL1/NOP2/sun family protein, expressed
LOC_Os08g37790Os.7759.1.S1_at10/118+23802017..23806045Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor, putative, expressed
LOC_Os08g37790OsAffx.14941.4.S1_s_at1/118+23802017..23806045Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor, putative, expressed
LOC_Os08g37800Os.338.1.S2_a_at11/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.4.S1_s_at11/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.2.S1_x_at11/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.1.S2_x_at9/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.1.S1_x_at7/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.3.S1_x_at6/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37810Os.6016.1.A1_s_at11/118+23818520..23820148expressed protein
LOC_Os08g37810Os.6016.1.A1_at11/118+23818520..23820148expressed protein
LOC_Os08g37820Os.15847.1.A1_at11/118+23824209..23828119expressed protein
LOC_Os08g37820OsAffx.17386.1.S1_at11/118+23824209..23828119expressed protein
LOC_Os08g37830OsAffx.6061.1.S1_at11/118+23835658..23836080hypothetical protein
LOC_Os08g37840Os.14366.1.S1_s_at11/118+23836502..23837787Phosphate-induced protein 1 conserved region containing protein, expressed
LOC_Os08g37840Os.14366.1.S1_at10/118+23836502..23837787Phosphate-induced protein 1 conserved region containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0046777biological_processprotein amino acid autophosphorylation
GO:0000152cellular_componentnuclear ubiquitin ligase complex
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.338.4.S1_s_at--282--3512Chr08:23814160..23814184 (25 bp)
CATGTAAATAGGCAGCTGTGACTTT
LOC_Os08g37800
Os.338.4.S1_s_at--999--2252Chr08:23814165..23814189 (25 bp)
AAATAGGCAGCTGTGACTTTCTTCC
LOC_Os08g37800
Os.338.4.S1_s_at--851--10091Chr08:23814168..23814192 (25 bp)
TAGGCAGCTGTGACTTTCTTCCCGG
LOC_Os08g37800
Os.338.4.S1_s_at--227--10531Chr08:23814183..23814207 (25 bp)
TTCTTCCCGGCCCTTAGATAGAGAA
LOC_Os08g37800
Os.338.4.S1_s_at--754--9311Chr08:23814187..23814211 (25 bp)
TCCCGGCCCTTAGATAGAGAAGGTT
LOC_Os08g37800
Os.338.4.S1_s_at--234--5951Chr08:23814203..23814227 (25 bp)
GAGAAGGTTGTTGTTTGAGTGACTA
LOC_Os08g37800
Os.338.4.S1_s_at--1--6651Chr08:23814212..23814236 (25 bp)
GTTGTTTGAGTGACTAGTGTTATGT
LOC_Os08g37800
Os.338.4.S1_s_at--920--2271Chr08:23814246..23814270 (25 bp)
AAATGTTGGTTGTTACAGGCTTACA
LOC_Os08g37800
Os.338.4.S1_s_at--509--6611Chr08:23814250..23814274 (25 bp)
GTTGGTTGTTACAGGCTTACATAGT
LOC_Os08g37800
Os.338.4.S1_s_at--1059--7911Chr08:23814253..23814277 (25 bp)
GGTTGTTACAGGCTTACATAGTATA
LOC_Os08g37800
Os.338.4.S1_s_at--1025--3471Chr08:23814261..23814285 (25 bp)
CAGGCTTACATAGTATATAGATCTT
LOC_Os08g37800
Target Sequence 
CATGTAAATAGGCAGCTGTGACTTTCTTCCCGGCCCTTAGATAGAGAAGGTTGTTGTTTGAGTGACTAGTGTTATGTTGA
GCACCAAAATGTTGGTTGTTACAGGCTTACATAGTATATAGATCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.338.4.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis