Browse Element(s) Details


Os.6016.1.A1_at

Description gb:CB682631
DB_XREF= gi:29686356
DB_XREF=OSJNEf10C20.r
CLONE=OSJNEf10C20
TID=Os.6016.1
CNT=8
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.6016 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3781011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37780Os.21267.1.S1_at10/118+23794065..23801478NOL1/NOP2/sun family protein, expressed
LOC_Os08g37790Os.7759.1.S1_at10/118+23802017..23806045Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor, putative, expressed
LOC_Os08g37790OsAffx.14941.4.S1_s_at1/118+23802017..23806045Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor, putative, expressed
LOC_Os08g37800Os.338.1.S2_a_at11/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.4.S1_s_at11/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.2.S1_x_at11/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.1.S2_x_at9/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.1.S1_x_at7/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.3.S1_x_at6/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37810Os.6016.1.A1_s_at11/118+23818520..23820148expressed protein
LOC_Os08g37810Os.6016.1.A1_at11/118+23818520..23820148expressed protein
LOC_Os08g37820Os.15847.1.A1_at11/118+23824209..23828119expressed protein
LOC_Os08g37820OsAffx.17386.1.S1_at11/118+23824209..23828119expressed protein
LOC_Os08g37830OsAffx.6061.1.S1_at11/118+23835658..23836080hypothetical protein
LOC_Os08g37840Os.14366.1.S1_s_at11/118+23836502..23837787Phosphate-induced protein 1 conserved region containing protein, expressed
LOC_Os08g37840Os.14366.1.S1_at10/118+23836502..23837787Phosphate-induced protein 1 conserved region containing protein, expressed
LOC_Os08g37850OsAffx.27865.1.S1_x_at4/118+23843981..23846807transposon protein, putative, Pong sub-class

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Gene Ontology Classification
GO idTypeName
GO:0008652biological_processamino acid biosynthesis
GO:0045449biological_processregulation of transcription
GO:0005737cellular_componentcytoplasm
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6016.1.A1_at--1039--2411Chr08:23820060..23820084 (25 bp)
AAAAAATATCTGTGATGCCTATGCA
LOC_Os08g37810
Os.6016.1.A1_at--568--3111Chr08:23820064..23820088 (25 bp)
AATATCTGTGATGCCTATGCACTCT
LOC_Os08g37810
Os.6016.1.A1_at--961--10151Chr08:23820066..23820090 (25 bp)
TATCTGTGATGCCTATGCACTCTGT
LOC_Os08g37810
Os.6016.1.A1_at--324--491Chr08:23820067..23820091 (25 bp)
ATCTGTGATGCCTATGCACTCTGTC
LOC_Os08g37810
Os.6016.1.A1_at--210--8691Chr08:23820070..23820094 (25 bp)
TGTGATGCCTATGCACTCTGTCCAG
LOC_Os08g37810
Os.6016.1.A1_at--1097--8851Chr08:23820072..23820096 (25 bp)
TGATGCCTATGCACTCTGTCCAGGT
LOC_Os08g37810
Os.6016.1.A1_at--693--591Chr08:23820074..23820098 (25 bp)
ATGCCTATGCACTCTGTCCAGGTGA
LOC_Os08g37810
Os.6016.1.A1_at--631--4451Chr08:23820076..23820100 (25 bp)
GCCTATGCACTCTGTCCAGGTGATG
LOC_Os08g37810
Os.6016.1.A1_at--888--3691Chr08:23820078..23820102 (25 bp)
CTATGCACTCTGTCCAGGTGATGTG
LOC_Os08g37810
Os.6016.1.A1_at--760--651Chr08:23820080..23820104 (25 bp)
ATGCACTCTGTCCAGGTGATGTGTT
LOC_Os08g37810
Os.6016.1.A1_at--516--9031Chr08:23820081..23820105 (25 bp)
TGCACTCTGTCCAGGTGATGTGTTT
LOC_Os08g37810
Target Sequence 
AAAAAATATCTGTGATGCCTATGCACTCTGTCCAGGTGATGTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6016.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis