Browse Element(s) Details


Os.338.2.S1_x_at

Description gb:D82035.1
DB_XREF= gi:4107000
GEN=osk4
TID=Os.338.2
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.338 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for OSK4, complete cds.
PROD=OSK4
FL= gb:AK100591.1 gb:AK072723.1 gb:D82035.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3780011/11Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os03g179807/11Carbon catabolite derepressing protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37760Os.17554.1.S1_at11/118+23788248..23789810Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g37760OsAffx.17384.1.S1_at11/118+23788248..23789810Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g37760OsAffx.17384.1.S1_s_at11/118+23788248..23789810Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g37770NANA8+23792703..23792963hypothetical protein
LOC_Os08g37780Os.21267.1.S1_at10/118+23794065..23801478NOL1/NOP2/sun family protein, expressed
LOC_Os08g37790Os.7759.1.S1_at10/118+23802017..23806045Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor, putative, expressed
LOC_Os08g37790OsAffx.14941.4.S1_s_at1/118+23802017..23806045Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor, putative, expressed
LOC_Os08g37800Os.338.1.S2_a_at11/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.4.S1_s_at11/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.2.S1_x_at11/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.1.S2_x_at9/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.1.S1_x_at7/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.3.S1_x_at6/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37810Os.6016.1.A1_s_at11/118+23818520..23820148expressed protein
LOC_Os08g37810Os.6016.1.A1_at11/118+23818520..23820148expressed protein
LOC_Os08g37820Os.15847.1.A1_at11/118+23824209..23828119expressed protein
LOC_Os08g37820OsAffx.17386.1.S1_at11/118+23824209..23828119expressed protein
LOC_Os08g37830OsAffx.6061.1.S1_at11/118+23835658..23836080hypothetical protein
LOC_Os08g37840Os.14366.1.S1_s_at11/118+23836502..23837787Phosphate-induced protein 1 conserved region containing protein, expressed
LOC_Os08g37840Os.14366.1.S1_at10/118+23836502..23837787Phosphate-induced protein 1 conserved region containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0046777biological_processprotein amino acid autophosphorylation
GO:0000152cellular_componentnuclear ubiquitin ligase complex
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.338.2.S1_x_at--1024--2792Chr08:23813377..23813401 (25 bp)
AATGATTGAGGTCCTAAAGGCACTT
LOC_Os08g37800
Os.338.2.S1_x_at--49--8011Chr08:23813457..23813481 (25 bp)
GGAGCGTTGGGTATCCTCAGGCCAC
LOC_Os08g37800
Os.338.2.S1_x_at--256--6791Chr08:23813488..23813512 (25 bp)
GTTAGATGTCAACCACAGCTTTGTT
LOC_Os08g37800
Os.338.2.S1_x_at--1013--3971Chr08:23813539..23813563 (25 bp)
CGATGTAAACGGGAGGTTACCTGCT
LOC_Os08g37800
Os.338.2.S1_x_at--743--9972Chr08:23813556..23813580 (25 bp)
TACCTGCTGTGATCAAGTTTGAAAT
LOC_Os08g37800
Os.338.2.S1_x_at--1105--2812Chr08:23813570..23813972 (25 bp)
AAGTTTGAAATCCAGCTTTACAAGA
LOC_Os08g37800
Os.338.2.S1_x_at--763--5752Chr08:23813978..23814002 (25 bp)
GACGAGAAGTATCTGCTGGATATGC
LOC_Os08g37800
Os.338.2.S1_x_at--830--9652Chr08:23814019..23814043 (25 bp)
TCAGCTCCTTTTCCTGGACTTCTGT
LOC_Os08g37800
Os.338.2.S1_x_at--761--1791Chr08:23814078..23814102 (25 bp)
ACCCCGTGTTGGCTTCAGTGAATAA
LOC_Os08g37800
Os.338.2.S1_x_at--86--2372Chr08:23814105..23814129 (25 bp)
AAACCTAGGGTTTTATCATGTGCGG
LOC_Os08g37800
Os.338.2.S1_x_at--294--9632Chr08:23814120..23814144 (25 bp)
TCATGTGCGGTTTTTCACTGCAATA
LOC_Os08g37800
Target Sequence 
AATGATTGAGGTCCTAAAGGCACTTGAAGACTTAAATGTCTGCTGGAAGAAGAATGGACAGTACAACATGAAGTGCAGAT
GGAGCGTTGGGTATCCTCAGGCCACTGATATGTTAGATGTCAACCACAGCTTTGTTGATGACTCAATTATAATGGATAAT
GGCGATGTAAACGGGAGGTTACCTGCTGTGATCAAGTTTGAAATCCAGCTTTACAAGAGCAGAGACGAGAAGTATCTGCT
GGATATGCAGAGAGTTACGGGGCCTCAGCTCCTTTTCCTGGACTTCTGTGCAGCCTTCCTTACCAAACTGAGGGTTCTAT
AGTACCCCGTGTTGGCTTCAGTGAATAACCAAACCTAGGGTTTTATCATGTGCGGTTTTTCACTGCAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.338.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis