Browse Element(s) Details


OsAffx.17386.1.S1_at

Description tigr:9636.m03800
TID=OsAffx.17386.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3782011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37780Os.21267.1.S1_at10/118+23794065..23801478NOL1/NOP2/sun family protein, expressed
LOC_Os08g37790Os.7759.1.S1_at10/118+23802017..23806045Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor, putative, expressed
LOC_Os08g37790OsAffx.14941.4.S1_s_at1/118+23802017..23806045Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor, putative, expressed
LOC_Os08g37800Os.338.1.S2_a_at11/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.4.S1_s_at11/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.2.S1_x_at11/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.1.S2_x_at9/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.1.S1_x_at7/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.3.S1_x_at6/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37810Os.6016.1.A1_s_at11/118+23818520..23820148expressed protein
LOC_Os08g37810Os.6016.1.A1_at11/118+23818520..23820148expressed protein
LOC_Os08g37820Os.15847.1.A1_at11/118+23824209..23828119expressed protein
LOC_Os08g37820OsAffx.17386.1.S1_at11/118+23824209..23828119expressed protein
LOC_Os08g37830OsAffx.6061.1.S1_at11/118+23835658..23836080hypothetical protein
LOC_Os08g37840Os.14366.1.S1_s_at11/118+23836502..23837787Phosphate-induced protein 1 conserved region containing protein, expressed
LOC_Os08g37840Os.14366.1.S1_at10/118+23836502..23837787Phosphate-induced protein 1 conserved region containing protein, expressed
LOC_Os08g37850OsAffx.27865.1.S1_x_at4/118+23843981..23846807transposon protein, putative, Pong sub-class
LOC_Os08g37860OsAffx.29576.2.S1_at11/118+23849807..23853122hypothetical protein
LOC_Os08g37860OsAffx.29576.2.S1_x_at11/118+23849807..23853122hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17386.1.S1_at--1023--2671Chr08:23824877..23824901 (25 bp)
AAGCTCGGCGTCAGGTTTAGGGTGT
LOC_Os08g37820
OsAffx.17386.1.S1_at--1108--8091Chr08:23824908..23824932 (25 bp)
GGACGCTGAGGGATCCTATCAATGA
LOC_Os08g37820
OsAffx.17386.1.S1_at--1118--5471Chr08:23825997..23826021 (25 bp)
GAACTATCTAGTAAGCTTGTCAACT
LOC_Os08g37820
OsAffx.17386.1.S1_at--1159--2391Chr08:23826465..23826486 (22 bp)
AAACAGACTGCAACTTTAGCCCAAA
LOC_Os08g37820
OsAffx.17386.1.S1_at--719--5211Chr08:23826488..23826512 (25 bp)
GAATTCTGAGGCTACTCGAGTACTA
LOC_Os08g37820
OsAffx.17386.1.S1_at--172--4851Chr08:23826498..23826522 (25 bp)
GCTACTCGAGTACTAGCTGCCCAAG
LOC_Os08g37820
OsAffx.17386.1.S1_at--833--3271Chr08:23826555..23826579 (25 bp)
CAAAAGGTTTTATATGCAATGCAGG
LOC_Os08g37820
OsAffx.17386.1.S1_at--905--2031Chr08:23827591..23827615 (25 bp)
ACTTGAACTAATCCTTGCAATCGGG
LOC_Os08g37820
OsAffx.17386.1.S1_at--828--8831Chr08:23827636..23827660 (25 bp)
TGATAAAGAGGATTTGCCAGGCAAC
LOC_Os08g37820
OsAffx.17386.1.S1_at--55--211Chr08:23827647..23827671 (25 bp)
ATTTGCCAGGCAACGATACTTCCAG
LOC_Os08g37820
OsAffx.17386.1.S1_at--361--5151Chr08:23827656..23827680 (25 bp)
GCAACGATACTTCCAGCACGATTAT
LOC_Os08g37820
Target Sequence 
AAGCTCGGCGTCAGGTTTAGGGTGTTGCGGAGGACGCTGAGGGATCCTATCAATGAGAACTATCTAGTAAGCTTGTCAAC
TGAAAAACAGACTGCAACTTTAGCCCAAAAGAATTCTGAGGCTACTCGAGTACTAGCTGCCCAAGAAGACCTTCTTGAAA
AAGAACTTGGTGAAATTCAAAAGGTTTTATATGCAATGCAGGAACAACAACAGAAGCAACTTGAACTAATCCTTGCAATC
GGGGAGGCAAGCAGGATATTAGATGATAAAGAGGATTTGCCAGGCAACGATACTTCCAGCACGATTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17386.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis