Browse Element(s) Details


OsAffx.6061.1.S1_at

Description tigr:9636.m03801
TID=OsAffx.6061.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3783011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37800Os.338.1.S2_a_at11/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.4.S1_s_at11/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.2.S1_x_at11/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.1.S2_x_at9/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.1.S1_x_at7/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.3.S1_x_at6/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37810Os.6016.1.A1_s_at11/118+23818520..23820148expressed protein
LOC_Os08g37810Os.6016.1.A1_at11/118+23818520..23820148expressed protein
LOC_Os08g37820Os.15847.1.A1_at11/118+23824209..23828119expressed protein
LOC_Os08g37820OsAffx.17386.1.S1_at11/118+23824209..23828119expressed protein
LOC_Os08g37830OsAffx.6061.1.S1_at11/118+23835658..23836080hypothetical protein
LOC_Os08g37840Os.14366.1.S1_s_at11/118+23836502..23837787Phosphate-induced protein 1 conserved region containing protein, expressed
LOC_Os08g37840Os.14366.1.S1_at10/118+23836502..23837787Phosphate-induced protein 1 conserved region containing protein, expressed
LOC_Os08g37850OsAffx.27865.1.S1_x_at4/118+23843981..23846807transposon protein, putative, Pong sub-class
LOC_Os08g37860OsAffx.29576.2.S1_at11/118+23849807..23853122hypothetical protein
LOC_Os08g37860OsAffx.29576.2.S1_x_at11/118+23849807..23853122hypothetical protein
LOC_Os08g37874Os.23397.1.S2_at11/118+23855127..238634512-nitropropane dioxygenase family, putative, expressed
LOC_Os08g37874Os.23397.1.S1_at10/118+23855127..238634512-nitropropane dioxygenase family, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6061.1.S1_at--86--951Chr08:23835999..23836023 (25 bp)
AGGAAAACCATTGTGCTTGTGCCAT
LOC_Os08g37830
OsAffx.6061.1.S1_at--152--2371Chr08:23835995..23836019 (25 bp)
AAACCATTGTGCTTGTGCCATCATC
LOC_Os08g37830
OsAffx.6061.1.S1_at--386--3371Chr08:23835964..23835988 (25 bp)
CACCTTGTTGGCCATCGTGGAAAGC
LOC_Os08g37830
OsAffx.6061.1.S1_at--986--8431Chr08:23835955..23835979 (25 bp)
GGCCATCGTGGAAAGCATGCACACA
LOC_Os08g37830
OsAffx.6061.1.S1_at--628--8111Chr08:23835897..23835921 (25 bp)
GGACGACGCGATGCATCATCACTAT
LOC_Os08g37830
OsAffx.6061.1.S1_at--224--4971Chr08:23835885..23835909 (25 bp)
GCATCATCACTATGCCCCGGTTTGT
LOC_Os08g37830
OsAffx.6061.1.S1_at--424--10171Chr08:23835865..23835889 (25 bp)
TTTGTCCGGGCGTGGTATGGAGCAC
LOC_Os08g37830
OsAffx.6061.1.S1_at--136--971Chr08:23835822..23835846 (25 bp)
AGGACGAGAATCCATCCAGGCTGTG
LOC_Os08g37830
OsAffx.6061.1.S1_at--77--5971Chr08:23835817..23835841 (25 bp)
GAGAATCCATCCAGGCTGTGCAGGG
LOC_Os08g37830
OsAffx.6061.1.S1_at--980--5951Chr08:23835742..23835766 (25 bp)
GAGAGAAGGTTTGCCCGAGATAAAA
LOC_Os08g37830
OsAffx.6061.1.S1_at--453--6991Chr08:23835706..23835730 (25 bp)
GTACGGAAGGCGTCCCGTCGCTGCA
LOC_Os08g37830
Target Sequence 
AGGAAAACCATTGTGCTTGTGCCATCATCTACCACCACCTTGTTGGCCATCGTGGAAAGCATGCACACACAAGGAAGCAA
AAGCAAGGGGAGGACGGAGGACGGACGACGCGATGCATCATCACTATGCCCCGGTTTGTCCGGGCGTGGTATGGAGCACG
GGAAAGAGGGTGAGGACAGGACGAGAATCCATCCAGGCTGTGCAGGGGATAAGCTTGGGCGCACAGTGGCCGCGTGCCAG
CCGTGGCAGGGGAGAGGGAGAGAAGGTTTGCCCGAGATAAAAAGGCTTGGATGGTACGGAAGGCGTCCCGTCGCTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6061.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis